BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0082.p
         (919 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310195|ref|YP_003774287.1| inactivated superfamily I helic...  1534   0.0  

>gi|300310195|ref|YP_003774287.1| inactivated superfamily I helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 924

 Score = 1534 bits (3972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 807/926 (87%), Positives = 857/926 (92%), Gaps = 9/926 (0%)

Query: 1   MLLATVPIPPTPDFWQQAVRALLREGQPLGQALQAQQEGALDFSGVQLMVPAFSHAQNFK 60
           ML ATVPIPP+PDFWQQAVR LL  GQPLGQALQAQ   ALDFSGVQLMVPAFSHAQNFK
Sbjct: 1   MLSATVPIPPSPDFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK 60

Query: 61  AALSRELRRPYIAPRINTLSGLLAMQPPGESAPPSESERLMQLYAQLREHGWLKKMFSAR 120
           AALSRELRRPYIAPRINTLSGLLAMQPPGE APPSESERLMQLYAQLREHGWLKKMFSAR
Sbjct: 61  AALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQLREHGWLKKMFSAR 120

Query: 121 RNADLLPLAQTLLSLSDELTLALLPEIRANADGEEAAAGRWTQALAQLLEPLAPSAHGML 180
           RNADLLPLA TLL LSDEL+LALLPEIRA+A GE+A AGRWTQALAQLL PLAPSAH ML
Sbjct: 121 RNADLLPLAHTLLDLSDELSLALLPEIRASA-GEDAIAGRWTQALAQLLAPLAPSAHAML 179

Query: 181 SDEAALVWQVWKTQLDAHDRIVQRFDAMLALADQASLPLVWVSPTEPEPLDAAFLSAYAQ 240
           S+EAALVWQ+WK QLDA DRIVQRFDAML LA +ASLPL+WVSPTEPEPLDAAFL+AYAQ
Sbjct: 180 SEEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQ 239

Query: 241 RQPVRIVTLDWSRAVIAPLHPLYLSAWEELVRDDDGLPMEADQ-------AAVSPSHPIA 293
            QPVRIVTLDWSRA +APL+PLYLSAW ELVR+++G P  A +          S + P A
Sbjct: 240 HQPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEG-PAPAYEEFAASAPPEASAAAPSA 298

Query: 294 LPRLCPAGDLENAAIQSAQIVLRWLQQGKTDIAIVAQDRVTARRLRALLERAEVAVADET 353
           LP LCPA DLENAA+QSAQIVLRWLQQGK +IAIVAQDRVTARRLRALLERA+V+VADET
Sbjct: 299 LPLLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADET 358

Query: 354 GWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPEDADRSDRVMRIEARLRRTN 413
           GWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFP D  R+DRVMRIEARLRR N
Sbjct: 359 GWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRRAN 418

Query: 414 IAGDWQALQSAFAEAGQADDLACIITLAKQAARFGGRKTLAQWCETQRGLCQALGMEAAL 473
           IAGDWQALQ+AFA+A   DDL CI+TLA+QAARFGGRKTL+QWCETQR LC+ALGM+AAL
Sbjct: 419 IAGDWQALQTAFADARDPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCEALGMDAAL 478

Query: 474 RADGAGEQCLLMLDEIAAEQGGLTDTFSFAEWRALLNLRLDATSFMPPIKDRRVVMLPLN 533
           R DGAG+QCLLMLDEIAAEQG L D FSFAEWRALLNLRLDATS+MPPIKDRRVVMLPLN
Sbjct: 479 REDGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLN 538

Query: 534 GARLRRFEAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLTELLCV 593
           GARLRRF+AVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDL ELLC+
Sbjct: 539 GARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLVELLCI 598

Query: 594 NPEVVLCWQTHQDGEPNPVSPWVQRLELKLAQQGAAPLECVTLPPPLKPLRAVLSTMPMP 653
           NPEVVLCWQTHQDGEPNPVSPW++RLELKLAQQGAAPL+ + LPPP++ LRA+ S+MP P
Sbjct: 599 NPEVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQLRALPSSMPAP 658

Query: 654 SAPDLLPASLSASGFGSFLACPYQFFAQRMLRVAVMDELSDMPEKRDYGSWLHEILYRYH 713
           SAPDLLP +LSASGFGSFLACPYQFFAQRMLRVAVMDELS+MPEKRDYGSWLHEILY+YH
Sbjct: 659 SAPDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELSEMPEKRDYGSWLHEILYKYH 718

Query: 714 AHLRDNDTPLPARAPLLAQLSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEG 773
           AHLRDNDTPLPARA LLAQ SEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEG
Sbjct: 719 AHLRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEG 778

Query: 774 WQFAFGEESRSHALQWQDGGIELYGRLDRVDRNADGERAVLDYKTRTAASLRQKVKEEDD 833
           WQFAFGEES+S  LQW DGGIELYGRLDRVDRN  G+RA+LDYKTR+AASLRQKVKE+DD
Sbjct: 779 WQFAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDD 838

Query: 834 HQLAFYGLLAGGAVEHAHYVALELGPDKKTGDAAAPDFARQQKMLQQQITTTMQAVAHGA 893
           HQLAFYGLLAGG +EHAHYVALELGPDKKTGDAAAPDFAR+QKMLQQQITTTMQAVAHGA
Sbjct: 839 HQLAFYGLLAGGVIEHAHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGA 898

Query: 894 ALPANGIESVCQYCEMRGLCRKGAWL 919
           ALPANGIESVCQYCEMRGLCRKGAWL
Sbjct: 899 ALPANGIESVCQYCEMRGLCRKGAWL 924


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,664,758
Number of extensions: 105679
Number of successful extensions: 371
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 1
Length of query: 919
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 825
Effective length of database: 1,174,780
Effective search space: 969193500
Effective search space used: 969193500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)