BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0077.p (575 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310191|ref|YP_003774283.1| undecaprenyl-phosphate-4-amino-... 912 0.0 gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose tra... 100 3e-22 >gi|300310191|ref|YP_003774283.1| undecaprenyl-phosphate-4-amino-L-arabinose--lipid A 4-amino-L-arabinosyltransferase [Herbaspirillum seropedicae SmR1] Length = 574 Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust. Identities = 524/572 (91%), Positives = 551/572 (96%) Query: 2 MKPVRLPAAATNALPRLAVLALALLYILPGLIGRDPWKNEDATSFGIMWTMAHGNLADWL 61 MKPVRLPAAATNALPR+A+LALALLYILPGLIGRDPWKNEDATSFGIMWTMAHGNLADWL Sbjct: 1 MKPVRLPAAATNALPRMALLALALLYILPGLIGRDPWKNEDATSFGIMWTMAHGNLADWL 60 Query: 62 TPNVAGLPLPAESPLAYWFGAICIKLFGWLLGDPLAARVSIIGCFLVGSLSIWYTTYVLG 121 TPNVAGLPLPAESPLAYWFGAICI+LFGWLLGDPLAARVS IGCFLVGSLSIWYTTY+LG Sbjct: 61 TPNVAGLPLPAESPLAYWFGAICIQLFGWLLGDPLAARVSTIGCFLVGSLSIWYTTYLLG 120 Query: 122 RRAEAQPLKLAFGGQPEPKDFGRTLADGAFLIYLGFLGLLLHSHETSPKTLQIALVAYAM 181 RR EAQPLKLAFGGQPEPKDFGRTLADGAFLIYLGFLGLLLHSHETSPKTLQIALVAYAM Sbjct: 121 RRPEAQPLKLAFGGQPEPKDFGRTLADGAFLIYLGFLGLLLHSHETSPKTLQIALVAYAM 180 Query: 182 FGAARVFDAGKLRHGIWLGLALGMLVLTYGWLLPVGVMIALVLLAALRKDGRALGLLLLL 241 +GAARVFDA ++RH + LGLALGMLVLTYGWLLPVGV++ALVLL ALRKDGRA L+L L Sbjct: 181 YGAARVFDAHRVRHALGLGLALGMLVLTYGWLLPVGVLLALVLLTALRKDGRAAALVLGL 240 Query: 242 ALPMALLISAAWVAALHRLIPAEAASQFELWLSWNIYQLNRPTLATLAFLGKYGVWFAWP 301 ALP+ALLI AAW+ ALH LIP+EAA QFELW+SWN YQLN PTLATLAFLGKYGVWFAWP Sbjct: 241 ALPLALLICAAWLLALHTLIPSEAAGQFELWMSWNTYQLNVPTLATLAFLGKYGVWFAWP 300 Query: 302 AWPFAGWALYAWRRQLGSLHIALPLAFLIPITLLILVNVHREEGMLLPLLPALAILAAFG 361 AWPFAGWALYAWRRQLGSLHIALPLAFLIPITLL+L+N+HREEGMLLPLLPALAILAAFG Sbjct: 301 AWPFAGWALYAWRRQLGSLHIALPLAFLIPITLLVLMNIHREEGMLLPLLPALAILAAFG 360 Query: 362 LPTMKRGAINAVDWFSVMTLTTSAAFIWIGWIAKETGWPAKIARNAYKLAPGFKPGFEWI 421 LPTMKRGAINAVDWFSVMTLTTSAAFIWIGWIAKETGWPA+IARNAYKLAPGFKPGF WI Sbjct: 361 LPTMKRGAINAVDWFSVMTLTTSAAFIWIGWIAKETGWPAQIARNAYKLAPGFKPGFAWI 420 Query: 422 SLAIAVAATIAWILVVHWRISRRPAVLWRAVVLSSGGVILCWVLLMTLWLPWVNYGKSYA 481 SLAIA+AATIAWI+VVHWRISRRP+VLWRAVVLSSGGVILCWVLLMTLWLPWVNYGKSYA Sbjct: 421 SLAIAIAATIAWIVVVHWRISRRPSVLWRAVVLSSGGVILCWVLLMTLWLPWVNYGKSYA 480 Query: 482 GVAEQIESKLTSVKQCVQSNVGPAQRASFAYFGNVRFADERDQSCDYLLLQDDVSNQDAS 541 GVAEQIESKL SVKQCVQ+NVGPAQRASFAYFGNVRFADE Q CDYLLLQDD+SNQDA+ Sbjct: 481 GVAEQIESKLGSVKQCVQTNVGPAQRASFAYFGNVRFADEHGQRCDYLLLQDDISNQDAA 540 Query: 542 IMLRQYPGNWRMVWEGRRPSDRDERFRLYRRA 573 +MLRQYPG WRMVWEGRRPSDRDERFRLYRR+ Sbjct: 541 LMLRQYPGAWRMVWEGRRPSDRDERFRLYRRS 572 >gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose transferase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 584 Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 151/586 (25%), Positives = 249/586 (42%), Gaps = 69/586 (11%) Query: 18 LAVLALALLYILPGLIGRDPWKNEDATSFGIMWTMAHGNLADWLTPNVAGLPLPAESPLA 77 L VLA L ++LPG+ G PWK ++ +FG++ M ++L P AG P + PL Sbjct: 37 LLVLA-GLAWLLPGIFGHGPWKQDETYTFGVIHHMLVSG--EYLVPTNAGQPFMEKPPLY 93 Query: 78 YWFGAICIKLFGWLLGDPLAARVSIIGCFLVGSLSIWYTTYVL--GRRAEAQPLKLAFGG 135 YW + KL LL AR++ + LV + + ++ RR + P+ Sbjct: 94 YWTAMLLAKLLYPLLPYHEGARLASVLYNLVTLVFVARIAQLMWNERRVLSLPVL----- 148 Query: 136 QPEPKDFGRTLADGAFLIYLGFLGLLLHSHETSPKTLQIALVAYAMFGAARVFDAGKLRH 195 G ++ G G++ H+H+ + A A++G + + R Sbjct: 149 -------------GTVALFAGSPGMIKHAHDMFTDVALVTGGAMAIYGLLAIALNEERRA 195 Query: 196 -----GIWLGLALGMLVLTYGWLLPVGVMIALVLLAALRKDGRALGLLLLLALPMALLIS 250 W GL +G+ +T G +P+ + + L + R+L ++ A+L+S Sbjct: 196 PSWSAAFWFGLGVGITQMTKGLFVPLTFAATAMAVGVLVRPCRSLSYWKMVG--AAVLVS 253 Query: 251 AAWVAALHRLIPAEAASQFELWL---------SWNIYQLNRPTLATLAFLGKYGVWFAWP 301 + L+ + F W +++Y+L T+ G FA P Sbjct: 254 LPFFVVWPALLAQHSVPLFMEWFWDNNVGRFFGFSVYKLGSDNDHTVILRALIG--FALP 311 Query: 302 AWPFAGWALYAWR-RQLGSLHIALPLAFLIPITLLILVNVHREEGMLLPLLPALAILAAF 360 A AL RQ GS +ALPLAF ++ + + LLP+L LA+L A Sbjct: 312 GSVLAVLALATGDWRQTGSPRVALPLAFAAISLAVLQSSATARQLYLLPVLLPLALLGAR 371 Query: 361 GLPTMKRGAINAVDWFSVMTLTTSAAFIWIGWI-----AKETGWPAKIARNAYKLAPGFK 415 + + DWFS + AA IW ++ A + W I L F Sbjct: 372 AIARLPNAFHLGWDWFSRIAFGVLAAAIWAIYVVSSLPAADHHW---IDFMGQWLPLNFV 428 Query: 416 PGFEWISLAIAVAATIAWILVVHWRISR-RPAVLWRAVVLSSGGVILCWVLLMTLWLPWV 474 + ++LA AV ++ W+ W + + R A WR + G+ L W L TL LPW Sbjct: 429 TPLQPLALAAAVGMSVLWL----WGLGQLRLAGQWRGALSWFAGITLMWGLAFTLLLPWA 484 Query: 475 NYGKSYAGVAEQIESKLTSVKQ---CVQS-NVGPAQRASFAYFGNVRFA--DERDQS-CD 527 +YGKSY V ++ ++ + Q C+ S N+G ++ Y+ + D Q+ C Sbjct: 485 DYGKSYEFVYTDLKQQIAAQWQDGDCMASENLGESEAPMLYYYTGILHQPIDGVYQTQCR 544 Query: 528 YLLLQDDVSNQDASIMLRQYPGNWRMVWEGRRPSDRDERFRLYRRA 573 ++LL+ + L Q G W++ WEGRR D + ++YRRA Sbjct: 545 WVLLE-----TPGNTPLPQ--GQWKLFWEGRRDGDDGQLLKVYRRA 583 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.140 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,709,580 Number of extensions: 66239 Number of successful extensions: 294 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 290 Number of HSP's successfully gapped: 2 Length of query: 575 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 485 Effective length of database: 1,193,720 Effective search space: 578954200 Effective search space used: 578954200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)