BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0076.p
         (457 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310190|ref|YP_003774282.1| Na+-driven multidrug efflux pum...   683   0.0  

>gi|300310190|ref|YP_003774282.1| Na+-driven multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/448 (87%), Positives = 423/448 (94%)

Query: 8   LSSRHHVGRITRLAWPLLIGQLAIIANGVIDTAMVSRFSALDLGALALGVSIYVSVFVGL 67
           +SSRHHVGRI RLAWPLL+GQLA+IANGVIDT MVSRFSALDL ALALGVSIYVSVFVGL
Sbjct: 1   MSSRHHVGRIARLAWPLLVGQLALIANGVIDTVMVSRFSALDLAALALGVSIYVSVFVGL 60

Query: 68  SGVLQALQPTIGQLYGAGRVGEIGNEVKQGMWLAVLLSIVGSLILMFSPLFLAVAKASPE 127
           SGVLQALQPTIGQL+GAGR  EIG+EV+QGMWLAV LS++G+L+LMFSPLFL+VAKASPE
Sbjct: 61  SGVLQALQPTIGQLFGAGRHDEIGDEVRQGMWLAVFLSVIGALVLMFSPLFLSVAKASPE 120

Query: 128 LVEKATLYLRIEALALPATLFFRVYSSLNTALARPKMVMALQLGGLLLKLPLNALLIFGG 187
           LVEKATLYLRIEALALPATLFFRVYS+LNTA+ARPKMVMA+Q+ GLLLKLPLNALLIFGG
Sbjct: 121 LVEKATLYLRIEALALPATLFFRVYSALNTAIARPKMVMAIQVCGLLLKLPLNALLIFGG 180

Query: 188 LGLPAFGGPGCAIATTLIAWLMMIAAWLLVARLPLYRPLKLFGSGFVAPSWKSQRTLLLL 247
           LGLPAFGGPGCAIATTLIAWLMM+AAWLLVARLP+YRPLKLFG GFVAPSWK+ R LL L
Sbjct: 181 LGLPAFGGPGCAIATTLIAWLMMLAAWLLVARLPVYRPLKLFGRGFVAPSWKTLRRLLWL 240

Query: 248 GIPIGMSYFIEVTAFTLMAVFIARLGAVPVAGHQIAANVGTVLYMLPLSIASATSTLVAQ 307
           GIPIGMSYFIEVTAFTLMAVFIARLGAVPVAGHQI ANVGTVLYMLPLSIASATSTLVAQ
Sbjct: 241 GIPIGMSYFIEVTAFTLMAVFIARLGAVPVAGHQITANVGTVLYMLPLSIASATSTLVAQ 300

Query: 308 AIGGGNMAEAKKIGRAGIRLAVSLSVVIGVIVWFLREHIIRAYTPDPVIVGAALPLFLYI 367
           AIGGGN A AKKIG AGIRLA++LSV++G++V+ LR  IIRAYTPDP+I+GAALPLFLYI
Sbjct: 301 AIGGGNFAVAKKIGNAGIRLAIALSVLVGLVVYCLRGQIIRAYTPDPLIIGAALPLFLYI 360

Query: 368 AFYQLFDSMQVTTAFVLRAYKVAVVPTVIYAVTLWGVGLGGGYLLGLDPLGVAPPALRGP 427
           AFYQLFDS+QVTTAFVLRAYKVAVVPTVIYAVTLWGVGLGGGYLLGLDPLG+ PP L GP
Sbjct: 361 AFYQLFDSLQVTTAFVLRAYKVAVVPTVIYAVTLWGVGLGGGYLLGLDPLGLTPPNLLGP 420

Query: 428 SGFWLANSLSLGLVALGLLAYLRVIQRR 455
           +GFWLANS SLGLV +GLL YLR IQRR
Sbjct: 421 AGFWLANSASLGLVGIGLLYYLRHIQRR 448


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,203,109
Number of extensions: 47637
Number of successful extensions: 285
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,203,190
Effective search space: 443977110
Effective search space used: 443977110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)