BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0067.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310183|ref|YP_003774275.1| site specific integrase/recombi...   609   e-176
gi|300313582|ref|YP_003777674.1| site-specific integrase/recombi...   130   1e-31

>gi|300310183|ref|YP_003774275.1| site specific
           integrase/recombinase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  609 bits (1571), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/307 (95%), Positives = 301/307 (98%)

Query: 1   MGRTTPKIEAPSVSREAIDEFCDSLWLEDGLSKNTLDAYRRDMTLYAHWLYQERAKALYE 60
           MGRTTPKIEAP+VSREAIDEFCDSLWLEDGLSKNTL+AYRRDMT YAHWLYQERAKALYE
Sbjct: 1   MGRTTPKIEAPAVSREAIDEFCDSLWLEDGLSKNTLEAYRRDMTRYAHWLYQERAKALYE 60

Query: 61  TQAEDLNAYFAARHDETKPSSSNRRLAVLKRFFQLALRQHHVTADPCLKLRSARQPQRLP 120
           TQAEDLNAYFAARHD+TKPSSSNRRLAVLKRFFQLALRQHHV ADPCLKLRSARQPQR P
Sbjct: 61  TQAEDLNAYFAARHDQTKPSSSNRRLAVLKRFFQLALRQHHVAADPCLKLRSARQPQRFP 120

Query: 121 KTMSEGQVEALLAAPDVSTPLGLRDRAMIELMYASGLRVSELVTLKSIEVGMNEGVLRVT 180
           KT+SEGQVEALLAAPDVSTPLGLRDRAMIELMYASGLRVSELV LKSIEVGMNEGVLRVT
Sbjct: 121 KTLSEGQVEALLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVT 180

Query: 181 GKGSKTRLVPFGEEAGAWMARYLAEARSQILQGQIDDALFVTARGGPMTRQMFWTLIKKY 240
           GKGSKTRLVPFGEEAG+W+ RYLAEAR+QILQGQ+DDALFVTARGGPMTRQMFWTLIKKY
Sbjct: 181 GKGSKTRLVPFGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKY 240

Query: 241 ALQAGITVRLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLH 300
           ALQAG+T RLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLH
Sbjct: 241 ALQAGVTARLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLH 300

Query: 301 AAHHPRG 307
           AAHHPRG
Sbjct: 301 AAHHPRG 307


>gi|300313582|ref|YP_003777674.1| site-specific
           integrase/recombinase [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score =  130 bits (327), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 17/240 (7%)

Query: 84  RRLAVLKRFFQLALRQHHVTADPCLKLRSARQPQRLPKTMSEGQVEALLAAPD-VSTP-- 140
           R+L+  + FF     Q  + A+P   +++ ++ + LPK ++      L++ PD V  P  
Sbjct: 84  RKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAADDAIRLVSQPDPVRDPDS 143

Query: 141 -LGLRDRAMIELMYASGLRVSELVTLKSIEV-----------GMNEGVLRVTGKGSKTRL 188
            L   +RAM EL+Y+SGLRVSELV +   +V            + E  + VTGKG K R 
Sbjct: 144 TLAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVDLEEAEVTVTGKGGKKRK 203

Query: 189 VPFGEEAGAWMARYLA-EARSQILQGQIDD-ALFVTARGGPMTRQMFWTLIKKYALQAGI 246
           VP G+ A A +A +L   AR +   G  D  ALF+  RG  ++ ++    +K +     +
Sbjct: 204 VPVGQAARAALADWLPLRARLRKADGGPDSHALFLNERGARISPRVAQLRLKAHGRALEM 263

Query: 247 TVRLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPR 306
              + PH LRH+FA+H+L    DLR VQ +LGHA I+ TQ+YT +  +RL Q++   HPR
Sbjct: 264 ASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVYDQAHPR 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 965,036
Number of extensions: 39050
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)