BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0056.p
         (354 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310174|ref|YP_003774266.1| ferredoxin [4Fe-4S]-type protei...   649   0.0  

>gi|300310174|ref|YP_003774266.1| ferredoxin [4Fe-4S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/344 (93%), Positives = 325/344 (94%), Gaps = 3/344 (0%)

Query: 1   VRIADVDLSHREAGFQAWLDKGYHGEMDYMASHGLKRARPAELVPGTVRVVSVRMPYLPA 60
           VRIADVDLSHREAGFQAWLDKGYHGEMDYMASHGLKRARPAELVPGTVRVVSVRMPYLP 
Sbjct: 6   VRIADVDLSHREAGFQAWLDKGYHGEMDYMASHGLKRARPAELVPGTVRVVSVRMPYLPK 65

Query: 61  AADPDQPEQPDWRAREEARSADPAAAQVSIYARGRDYHKVLRARLQQLATRIEGRIGPFG 120
           A+ P    +PDWRAREEARSADP  AQVSIYARGRDYHKVLRARLQQLATRIEGRIGPFG
Sbjct: 66  ASGP---AEPDWRAREEARSADPGGAQVSIYARGRDYHKVLRARLQQLATRIEGRIGPFG 122

Query: 121 YRVFTDSAPVMEVALAEKAGLGWRGKHTLLLHREAGSMFFLGEMLTDLPLPVDEPVTSHC 180
           YRVFTDSAPVMEVALAEKAGLGWRGKHTLLLHREAGSMFFLGEMLTDLPLPVD+PVT HC
Sbjct: 123 YRVFTDSAPVMEVALAEKAGLGWRGKHTLLLHREAGSMFFLGEMLTDLPLPVDDPVTPHC 182

Query: 181 GQCSACITACPTGAIVAPYELDARRCISYLTIELKGSIPQDLRPLIGNRIYGCDDCQLYC 240
           GQCSACITACPTGAIVAPYELDARRCISYLTIELKGSIP +LRPLIGNRIYGCDDCQLYC
Sbjct: 183 GQCSACITACPTGAIVAPYELDARRCISYLTIELKGSIPSELRPLIGNRIYGCDDCQLYC 242

Query: 241 PWNKFAQRASLPDFDPRHGLDRASLVELFGWSEDTFLKNTEGSAIRRIGHERWLRNLAVG 300
           PWNKFAQRASLPDFD RHGLD ASLV LFGWSE+ FLKNTEGSAIRRIGHERWLRNLAVG
Sbjct: 243 PWNKFAQRASLPDFDVRHGLDSASLVGLFGWSEEEFLKNTEGSAIRRIGHERWLRNLAVG 302

Query: 301 LGNAADAPSHRGDAEIVAALRARLDHPSALVAEHVAWALARHGV 344
           LGNAADA SHRGDA IVAALRARL HPSALV EHV WALARHGV
Sbjct: 303 LGNAADAASHRGDAAIVAALRARLAHPSALVVEHVQWALARHGV 346


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,107,086
Number of extensions: 46319
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 268
Effective length of database: 1,212,660
Effective search space: 324992880
Effective search space used: 324992880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)