BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0054.p
         (442 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310172|ref|YP_003774264.1| N-acetylmuramoyl-l-alanine amid...   873   0.0  

>gi|300310172|ref|YP_003774264.1| N-acetylmuramoyl-l-alanine amidase
           [Herbaspirillum seropedicae SmR1]
          Length = 453

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/442 (97%), Positives = 436/442 (98%)

Query: 1   VKSKTRRTILKAGGALFVSVVTPLPALASQILAVRVWPSEDYTRVTLENDSDLKVTHFVV 60
           VKSK+RRTILKAGGALFVSV+TPLPALASQILAVRVWPS+DYTRVTLENDSDLKVTHFVV
Sbjct: 12  VKSKSRRTILKAGGALFVSVITPLPALASQILAVRVWPSDDYTRVTLENDSDLKVTHFVV 71

Query: 61  KNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLVFDLKDEIKPQV 120
           KNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLVFDLKDEIKPQV
Sbjct: 72  KNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLVFDLKDEIKPQV 131

Query: 121 FTLAPVGEYKYRFVIDLYPAAPPDPIAALIQKGEWNKESPATPPLAQAPAAPPKPDPAPL 180
           FTLAPVGEYKYRFVIDLYPA PPDPIAALIQKG+WNKESPA PPLAQ P  PPKPDPAPL
Sbjct: 132 FTLAPVGEYKYRFVIDLYPANPPDPIAALIQKGDWNKESPANPPLAQGPVTPPKPDPAPL 191

Query: 181 AEIKPQPEDKTERNPKVVPDEPRMQLTRMITIALDPGHGGEDPGATGARGNREKDVVLSI 240
           AEIKPQPEDK ERNPKVVPDEPRMQLTRMITIALDPGHGGEDPGATGARGNREKDVVLSI
Sbjct: 192 AEIKPQPEDKNERNPKVVPDEPRMQLTRMITIALDPGHGGEDPGATGARGNREKDVVLSI 251

Query: 241 AKRLKRKIEQYPNMRVMLTRDADFFVPLGQRVVKARKVQADLFVSIHADAFVQPTARGSS 300
           AKRLKRKIEQYPNMRVMLTRDADFFVPLGQRVVKARKVQADLFVSIHADAFVQPTARGSS
Sbjct: 252 AKRLKRKIEQYPNMRVMLTRDADFFVPLGQRVVKARKVQADLFVSIHADAFVQPTARGSS 311

Query: 301 VFALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLASVLLDLSTTAQINDSLRVGN 360
           VFALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLASVLLDLSTTAQINDSLRVGN
Sbjct: 312 VFALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLASVLLDLSTTAQINDSLRVGN 371

Query: 361 AVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKLTDERYQEQMAD 420
           AVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKLTDERYQEQMAD
Sbjct: 372 AVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKLTDERYQEQMAD 431

Query: 421 AILTGIRNYFAKNPPLAKNRLT 442
           AILTGIRNYFAKNPPLAKN+LT
Sbjct: 432 AILTGIRNYFAKNPPLAKNKLT 453


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,179,627
Number of extensions: 43611
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,203,190
Effective search space: 425929260
Effective search space used: 425929260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)