BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0050.p (202 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis tra... 330 3e-92 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 254 4e-69 gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 251 2e-68 gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis tra... 249 1e-67 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 249 1e-67 >gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 657 Score = 330 bits (847), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 193/202 (95%), Positives = 200/202 (99%) Query: 1 VKQNAANAIQADELAGSASEVASHGGDVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQT 60 VKQNAANA QADEL+ +ASEVASHGG+VVGQVVQTMDAINSSSQRIVDIISVIDGIAFQT Sbjct: 456 VKQNAANAEQADELSSAASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQT 515 Query: 61 NILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSASAAKEIKELIDASVQTVAGGGQLV 120 NILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSA+AAKEIKELIDASVQTVAGGGQLV Sbjct: 516 NILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGGQLV 575 Query: 121 SQAGNTMNDVVASVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAA 180 +QAGNTMNDVV+SVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAA Sbjct: 576 TQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAA 635 Query: 181 AAAQSLQQQAERLAAAVSTFRV 202 AAAQSLQQQAERLAAAVSTFR+ Sbjct: 636 AAAQSLQQQAERLAAAVSTFRI 657 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 254 bits (649), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 147/202 (72%), Positives = 175/202 (86%) Query: 1 VKQNAANAIQADELAGSASEVASHGGDVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQT 60 VKQNA NA QA++LA SAS+VA HGG VVGQVV TM +IN SS++IVDIISVIDGIAFQT Sbjct: 392 VKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRKIVDIISVIDGIAFQT 451 Query: 61 NILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSASAAKEIKELIDASVQTVAGGGQLV 120 NILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LID SVQ V G QLV Sbjct: 452 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGLIDDSVQKVETGSQLV 511 Query: 121 SQAGNTMNDVVASVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAA 180 +QAG+TM +VV+SV+RV+ ++ EI+ AS+EQS GI ++ A+ QMDE+TQQNAALVEQAA Sbjct: 512 AQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQMDEATQQNAALVEQAA 571 Query: 181 AAAQSLQQQAERLAAAVSTFRV 202 AAA+SLQ+QA LAA V+ F++ Sbjct: 572 AAAKSLQEQAAHLAAVVAGFKL 593 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 251 bits (642), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 151/202 (74%), Positives = 171/202 (84%) Query: 1 VKQNAANAIQADELAGSASEVASHGGDVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQT 60 VKQNA NA+QA++LA SAS AS GG+VV QVV TM AIN SS++IVDIISVIDGIAFQT Sbjct: 314 VKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIVDIISVIDGIAFQT 373 Query: 61 NILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSASAAKEIKELIDASVQTVAGGGQLV 120 NILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LID SV+ V G QLV Sbjct: 374 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVEKVEAGSQLV 433 Query: 121 SQAGNTMNDVVASVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAA 180 QAG TM++VV SVQRV+ ++ EI ASREQS GI+Q+NRAI QMDE TQQNAALVE+AA Sbjct: 434 EQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEEAA 493 Query: 181 AAAQSLQQQAERLAAAVSTFRV 202 AAAQSLQ QA L AVS F++ Sbjct: 494 AAAQSLQAQATNLVGAVSIFKI 515 >gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 249 bits (636), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 151/202 (74%), Positives = 173/202 (85%) Query: 1 VKQNAANAIQADELAGSASEVASHGGDVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQT 60 VKQNA NA QAD LA SAS VAS GG VV +VV TMDAINSSS +IVDIISVIDGIAFQT Sbjct: 308 VKQNADNAHQADTLASSASSVASEGGKVVQEVVHTMDAINSSSLKIVDIISVIDGIAFQT 367 Query: 61 NILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSASAAKEIKELIDASVQTVAGGGQLV 120 NILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSASAA+EIKELID SV+ V G +LV Sbjct: 368 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVEKVQSGSRLV 427 Query: 121 SQAGNTMNDVVASVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAA 180 QAGNTM VV SVQRVS ++ +I+ AS EQS+GI Q+N+AI MD++TQQNAALVE+AA Sbjct: 428 MQAGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAALVEEAA 487 Query: 181 AAAQSLQQQAERLAAAVSTFRV 202 AA+QSL++QA+ LA AVS FR+ Sbjct: 488 AASQSLREQAKGLAQAVSVFRL 509 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 249 bits (636), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 151/202 (74%), Positives = 173/202 (85%) Query: 1 VKQNAANAIQADELAGSASEVASHGGDVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQT 60 VKQNA NA QA+ LA +ASEVA GG VVGQVVQTM IN +S++IVDIISVIDGIAFQT Sbjct: 312 VKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVIDGIAFQT 371 Query: 61 NILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSASAAKEIKELIDASVQTVAGGGQLV 120 NILALNAAVEAARAGEQGRGFAVVA+EVRTLAQRSASAAKEIK LID SV V G +LV Sbjct: 372 NILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVSRVDNGSRLV 431 Query: 121 SQAGNTMNDVVASVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAA 180 QAG TM +VVASV+RV+ V++EI+ AS EQS+GI+QIN AI QMD+ TQQNAALVE+AA Sbjct: 432 EQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQNAALVEEAA 491 Query: 181 AAAQSLQQQAERLAAAVSTFRV 202 AAAQSLQ+Q+ RL+A VS F++ Sbjct: 492 AAAQSLQEQSTRLSATVSVFKL 513 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.309 0.120 0.293 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 358,245 Number of extensions: 10092 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 70 Length of query: 202 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 121 Effective length of database: 1,236,335 Effective search space: 149596535 Effective search space used: 149596535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 128 (53.9 bits)