BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0049.p
         (502 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310168|ref|YP_003774260.1| DNA mismatch repair protein [He...   756   0.0  

>gi|300310168|ref|YP_003774260.1| DNA mismatch repair protein
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/468 (86%), Positives = 418/468 (89%), Gaps = 9/468 (1%)

Query: 16  PSHRPIQALPDQLISQIAAGEVIERPSAVVKELLENALDAGSTQITVRLEQGGVKRIAIT 75
           PS+RPIQALPDQLISQIAAGEVIERPSAVVKELLENALDAGSTQITVRLEQGGVKRIAIT
Sbjct: 2   PSYRPIQALPDQLISQIAAGEVIERPSAVVKELLENALDAGSTQITVRLEQGGVKRIAIT 61

Query: 76  DNGRGIPPEQLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTADA 135
           DNGRGIPPEQLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTADA
Sbjct: 62  DNGRGIPPEQLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTADA 121

Query: 136 PHAWEITGSQFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEVVRRIAL 195
           PHAWEITGSQFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEVVRRIAL
Sbjct: 122 PHAWEITGSQFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEVVRRIAL 181

Query: 196 ARPDVSFSLSHNGKTVDHWNVGEFAKRSAHILGDEFANARLPLDESAGPLRLHGFVGLPT 255
           ARPDVSFSLSHNGKTVDHWNVGEFAKRSAHILGDEFANARLPLDESAGPLRLHGFVGLPT
Sbjct: 182 ARPDVSFSLSHNGKTVDHWNVGEFAKRSAHILGDEFANARLPLDESAGPLRLHGFVGLPT 241

Query: 256 ASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYPAYALSLTLDPALVDVNVHP 315
           ASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYPAYALSLTLDPALVDVNVHP
Sbjct: 242 ASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYPAYALSLTLDPALVDVNVHP 301

Query: 316 SKIEVRFRDSRAVHQFVFHAVSRALAQTSAVSFGNLPQQQTESTEGTPAPASGPNAPLPW 375
           SKIEVRFRDSRAVHQFVFHAVSRALAQTSAVSFGNLP    +S +   AP    NAPLPW
Sbjct: 302 SKIEVRFRDSRAVHQFVFHAVSRALAQTSAVSFGNLPGAAPQSDDSAGAPPPAANAPLPW 361

Query: 376 MREQKQQSFSAQFAEQPRPFSFAGNGGQGSGGYGVRQDRAAYGNMFRSEPAEQSDSGNAA 435
           + EQ+QQSFSAQFAE PRPFSF GN      G+GVRQ+  AYG+MFRS P     SG   
Sbjct: 362 IGEQQQQSFSAQFAEAPRPFSFGGN-----SGFGVRQNTEAYGSMFRSAPT----SGEPD 412

Query: 436 AGFNSAAFQSAAQPAAPLPDGDFPLGFALAQLHGIYVLAQXVCVCVCV 483
               +A   + A   A LP+GDFPLGFALAQLHGIYVLAQ     V V
Sbjct: 413 GSAPAAYGATPAAAPAALPEGDFPLGFALAQLHGIYVLAQNQAGLVVV 460


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,414,885
Number of extensions: 57498
Number of successful extensions: 254
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 413
Effective length of database: 1,198,455
Effective search space: 494961915
Effective search space used: 494961915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)