BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0047.p
         (318 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310167|ref|YP_003774259.1| tRNA delta2-isopentenylpyrophos...   563   e-162

>gi|300310167|ref|YP_003774259.1| tRNA
           delta2-isopentenylpyrophosphate transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 315

 Score =  563 bits (1451), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/310 (90%), Positives = 296/310 (95%)

Query: 3   QQLPLAVAIMGPTASGKTAAALEIARHLPCEIISVDSALVYREMDVGTAKPSPEELAAVP 62
           Q LPLAV+IMGPTASGKTAAALEIARHLPCEIISVDSALVYREMD+GTAKP+P ELA VP
Sbjct: 4   QTLPLAVSIMGPTASGKTAAALEIARHLPCEIISVDSALVYREMDIGTAKPTPAELAQVP 63

Query: 63  HHLIDIIDPTEAYSAMQFRQDALRLTLEIASRGKLPLLVGGTMLYFKVLRDGLDELPQAD 122
           HHLIDIIDPTEAYSAMQFRQDALRLT EI +RG+LPLLVGGTMLYFKVLRDGLDELPQAD
Sbjct: 64  HHLIDIIDPTEAYSAMQFRQDALRLTQEIIARGRLPLLVGGTMLYFKVLRDGLDELPQAD 123

Query: 123 PALRAQLDEEAARIGMPAMHARLATLDPVTAARLKPTDSQRIQRALEISLLTGQPMSSLL 182
           PALRAQLDEEAAR+GMPAMHARLA LDPVTAARLKP DSQRIQRALEISLLTGQPMS+LL
Sbjct: 124 PALRAQLDEEAARVGMPAMHARLAELDPVTAARLKPNDSQRIQRALEISLLTGQPMSALL 183

Query: 183 SQKPPEPLPFEMLPLALEPADRAVLHERIALRFDLMLRGGALEREVAALRARGDLHLGLP 242
           +QKP EPLP  +LPLALEP++RA+LH+RIALRFDLMLR G LEREV ALRARGDLHLGLP
Sbjct: 184 AQKPAEPLPMRLLPLALEPSERAILHDRIALRFDLMLRDGGLEREVRALRARGDLHLGLP 243

Query: 243 SMRCVGYRQMWEYLDGSIDATALREKGIAATRQLAKRQLTWLRSMPERISIDCNRPEATA 302
           SMRCVGYRQMWEYLDGSIDA A+REKGIAATRQLAKRQLTWLRSMPERISIDCNRPEATA
Sbjct: 244 SMRCVGYRQMWEYLDGSIDAAAMREKGIAATRQLAKRQLTWLRSMPERISIDCNRPEATA 303

Query: 303 EVLARVQQAL 312
           EVLARV++A+
Sbjct: 304 EVLARVREAV 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 894,344
Number of extensions: 35381
Number of successful extensions: 191
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,217,395
Effective search space: 283653035
Effective search space used: 283653035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)