BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0045.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310066|ref|YP_003774158.1| hypothetical protein Hsero_0731...   385   e-108

>gi|300310066|ref|YP_003774158.1| hypothetical protein Hsero_0731
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  385 bits (988), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 179/253 (70%), Positives = 212/253 (83%)

Query: 30  DQITWGKYNVPPYMIRSGEFAHQGIFDLTLNVLKKEMPGYEHVELEAPFPRINSEIRKGS 89
           +QI WG+++VPPYMIR GE+A +GIFDLTL V+   +P Y+HV+L APFPR+ SEIRKGS
Sbjct: 29  NQIIWGRHHVPPYMIREGEWAGRGIFDLTLGVVTSHLPQYQHVDLAAPFPRVISEIRKGS 88

Query: 90  HWCFNGMLKTPEREHYGYLSLPMSIFLPLRIIVRRDRVEEFRHRTSLTGLLQDPRLTTSV 149
           HWC+ G L+T ERE Y Y SLP SIFLPLR+IVRRDR+ +F H  SL  LLQ+ +L TSV
Sbjct: 89  HWCYIGALRTSEREAYAYFSLPTSIFLPLRVIVRRDRLAQFSHPQSLKSLLQNRQLVTSV 148

Query: 150 MRDRSYSPTVDKLLATYPPRENYSEQMEAIGMLLAGRLDYMVELPLLAFDQARAMGHAGE 209
           MRDRSYSPTVD+LLA YP RENYSEQ+EAI MLLAGR+DYM+ELPLLAF QAR +GHA E
Sbjct: 149 MRDRSYSPTVDRLLAEYPARENYSEQIEAISMLLAGRIDYMIELPLLAFYQARLLGHADE 208

Query: 210 LVALPMREANEVVFNRVMCPHNEWGRQVVEQVNKVLLAERAKPSYRAIVEKWHDPESVAE 269
           L A+   EA+EVVFNRVMCP N WGRQV++QVN+VLLAER  P+YRA+VE+WHDPES AE
Sbjct: 209 LAAVRTEEADEVVFNRVMCPRNAWGRQVIDQVNQVLLAERPTPAYRAMVERWHDPESTAE 268

Query: 270 IRKIYDKVFLKIP 282
           IR++YDKVFLK P
Sbjct: 269 IRRLYDKVFLKTP 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 820,965
Number of extensions: 30968
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)