BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0044.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310065|ref|YP_003774157.1| N-acyl-D-glucosamine 2-epimeras...   612   e-176

>gi|300310065|ref|YP_003774157.1| N-acyl-D-glucosamine 2-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  612 bits (1578), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/394 (75%), Positives = 323/394 (81%)

Query: 1   MSLPDLESRAFLQAHVADTLAFYDRHAIDPEGGFFHYLKDDGSVYERSHRHLVSATRLVF 60
           M  PD ESR FL AHVADTLAFYDRHAIDP GGFFHYLKD+G VY   HRHLVSATRLVF
Sbjct: 1   MPQPDFESRRFLHAHVADTLAFYDRHAIDPLGGFFHYLKDNGRVYNAGHRHLVSATRLVF 60

Query: 61  TQSMAYLHTGQSRYLEQTRHALAHLQRFRHAGGPLAGLYAWTLRDGQIEDGTVMAYGQAF 120
           TQ+MAY H+G +RYL Q R A   L RFRHA GPL GLYAWTL+D +IED TVMAYGQAF
Sbjct: 61  TQTMAYTHSGHTRYLRQARRAWDELARFRHASGPLQGLYAWTLQDERIEDATVMAYGQAF 120

Query: 121 VLLAFAQAHRVGLCDAQQVAQAYERMESAFFEPAHEAYADEITPSGELIPYRGQNANMHM 180
           VLLA A AHR+GLC    VA A+ERME+AFFEPAH+AYADEITP+GELI YRGQNANMHM
Sbjct: 121 VLLACAHAHRIGLCGEDAVADAFERMETAFFEPAHQAYADEITPAGELIGYRGQNANMHM 180

Query: 181 CEACLAAHVATGDAVYLERAQLLIERFVFGLARQSQDLVWEHYRQDWSLDHDYNRGNRDN 240
           CEACL+A+  TG   YLERA  LIERFVF LA+ +Q LVWEHY QDW+ D DYN+G R N
Sbjct: 181 CEACLSAYEVTGQRRYLERALALIERFVFDLAQHTQGLVWEHYHQDWTPDLDYNKGKRSN 240

Query: 241 IFKPWGFQTGHQTEWAKLLLIAHAQEPRPAYVTRAAELQDAAWQHGWDALYGGLIYGFDP 300
           IFKPWGFQTGHQTEWAKLLLIAH   P  A++ RA EL  AAW +GWD+++GGLIYGF  
Sbjct: 241 IFKPWGFQTGHQTEWAKLLLIAHGHAPNAAFLPRAIELHQAAWTYGWDSIHGGLIYGFGL 300

Query: 301 DLRPYDTDKYFWVQAESFASAWRLWRVTGEERFRQQYHAIWAWSWAHLVDHHHGAWFRIL 360
           +  PYD DKYFWVQAESFASAWRLWR TGE  FR QY  +WAWSW H+VDH HGAWFRIL
Sbjct: 301 EREPYDRDKYFWVQAESFASAWRLWRATGEPAFRDQYRMLWAWSWQHMVDHEHGAWFRIL 360

Query: 361 AADGSKLEDTKSPAGKVDYHTMGACWDVMEAGGL 394
           AADGSKLEDTKSPAGKVDYHTMGACWDV+  GGL
Sbjct: 361 AADGSKLEDTKSPAGKVDYHTMGACWDVLAVGGL 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,470,892
Number of extensions: 66309
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)