BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0042.p (364 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 579 e-166 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 280 9e-77 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 271 5e-74 gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [H... 261 6e-71 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 259 2e-70 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 579 bits (1492), Expect = e-166, Method: Compositional matrix adjust. Identities = 300/360 (83%), Positives = 315/360 (87%), Gaps = 7/360 (1%) Query: 1 MDEPTAALSERETEHLFGVVKRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELA 60 MDEPTAALSERETE LF VV+RLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGEL Sbjct: 167 MDEPTAALSERETEQLFNVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELV 226 Query: 61 REEIDSERIVQMMVGRSLGEFYQHTRMAPERAAALPVVLQVQDLAGGKVRPASFAVRAGE 120 R+EIDSERIVQMMVGRSL EFYQH R+AP AA LP V+QV+ LAGGK+RPASF VRAGE Sbjct: 227 RDEIDSERIVQMMVGRSLSEFYQHQRIAPADAAQLPTVMQVRALAGGKIRPASFDVRAGE 286 Query: 121 VLGFAGLVGAGRTELARLLFGADARSGGHVLLDGQVVHIDEPRAAMRAGIAYVPEDRKGQ 180 VLGFAGLVGAGRTELARLLFGAD RSGG +LL+G+ VHID+PRAAMRAGIAYVPEDRKGQ Sbjct: 287 VLGFAGLVGAGRTELARLLFGADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQ 346 Query: 181 GLFLQMAVGANATMNVAGRHSTAGLVRSGALDGVARDAIQRLNVKVAHPGVAVGKLSGGN 240 GLFLQMAV ANATMNVA RH+ GLVRS +L GVAR AIQRLNVKVAHP VGKLSGGN Sbjct: 347 GLFLQMAVAANATMNVASRHTRLGLVRSRSLGGVARAAIQRLNVKVAHPETPVGKLSGGN 406 Query: 241 QQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVISSELPEVIG 300 QQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVH+LA QGVAVVVISSELPEVIG Sbjct: 407 QQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIG 466 Query: 301 ICDRVLVMREGSITGELAGAAITQEAIMHLATDAGGMHGAHGQAAPASGMAHSGLPSSPS 360 ICDRVLVMREG ITGELAGAAITQE IM LATD + APAS S P +PS Sbjct: 467 ICDRVLVMREGMITGELAGAAITQENIMRLATDTN-----VPRTAPAS--HSSPTPLAPS 519 Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 5/217 (2%) Query: 114 FAVRAGEVLGFAGLVGAGRTELARLLFGADARSGGHVLLDGQVVHIDEPRAAMRAGIAYV 173 +R GE+ G GAG++ L ++L G A G +LLDG+ V + +P A+ AGI + Sbjct: 27 LTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILLDGRPVALRDPGASRAAGINLI 86 Query: 174 PEDRKGQGLFLQMAVGANATMNVAGRHSTAGLVRSGALDGVARDAIQRLNVKVAHPGVAV 233 ++ + ++V AN M R + GL+ A+ +++L +A Sbjct: 87 YQE---LAVAPNISVAANVFMGSELR-TRLGLIDHAAMRSRTDAVLRQLGAGFGASDLA- 141 Query: 234 GKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVISS 293 G+LS QQ+V +AR L +++I+DEPT + +++ +V +L ++G+A++ IS Sbjct: 142 GRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNVVRRLRDEGLAIIYISH 201 Query: 294 ELPEVIGICDRVLVMREGSITGELAGAAITQEAIMHL 330 + EV + DRV V+R+GS GEL I E I+ + Sbjct: 202 RMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQM 238 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 280 bits (717), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 158/334 (47%), Positives = 219/334 (65%), Gaps = 7/334 (2%) Query: 1 MDEPTAALSERETEHLFGVVKRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELA 60 MDEPTAAL+ E LF +++ L+ +G+ I+YISH+M E+ +ADRV+V+RDG ++ + Sbjct: 184 MDEPTAALNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVP 243 Query: 61 REEIDSERIVQMMVGRSL-GEFYQHTRMAPERAAALPVVLQVQDLAGGK-VRPASFAVRA 118 +E + I+ MMVGR+L GE R+ P+ + VVL+V+ L G+ +R SF +R Sbjct: 244 MQETSMDTIISMMVGRALDGE----QRIPPDTSRN-DVVLEVRGLNRGRAIRDVSFTLRK 298 Query: 119 GEVLGFAGLVGAGRTELARLLFGADARSGGHVLLDGQVVHIDEPRAAMRAGIAYVPEDRK 178 GE+LGFAGL+GAGRTE+AR +FGAD G +++ G I P A+ GI Y+ EDRK Sbjct: 299 GEILGFAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRK 358 Query: 179 GQGLFLQMAVGANATMNVAGRHSTAGLVRSGALDGVARDAIQRLNVKVAHPGVAVGKLSG 238 GL + M V AN ++ GR + G + A+ A+ +++L +K LSG Sbjct: 359 HFGLAVGMDVQANIALSSMGRFTRVGFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSG 418 Query: 239 GNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVISSELPEV 298 GNQQK+++A+WL +L DEPTRG+D+ AKSEIY+L+ LAEQG A+V+ISSELPEV Sbjct: 419 GNQQKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEV 478 Query: 299 IGICDRVLVMREGSITGELAGAAITQEAIMHLAT 332 + + RVLVM EG ITGELA A TQE IM LAT Sbjct: 479 LRMSHRVLVMCEGRITGELARADATQEKIMQLAT 512 Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 4/219 (1%) Query: 112 ASFAVRAGEVLGFAGLVGAGRTELARLLFGADARSGGHVLLDGQVVHIDEPRAAMRAGIA 171 F + AGEV G GAG++ L ++L G R G +LLDG+ V I EPR A GI Sbjct: 41 CQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGKPVEITEPRQAQALGIG 100 Query: 172 YVPEDRKGQGLFLQMAVGANATMNVAGRHSTAGLVRSGALDGVARDAIQRLNVKVAHPGV 231 + ++ L ++ N + R + + L+ A R+ + + P Sbjct: 101 IIHQELN---LMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQAAAIFARMRLDM-DPST 156 Query: 232 AVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVI 291 VG+L+ QQ V +A+ L +VLI+DEPT ++ +E+++++ L QGV +V I Sbjct: 157 PVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFRIIRDLQAQGVGIVYI 216 Query: 292 SSELPEVIGICDRVLVMREGSITGELAGAAITQEAIMHL 330 S ++ E+ I DRV VMR+G + + + I+ + Sbjct: 217 SHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISM 255 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 271 bits (694), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 155/347 (44%), Positives = 212/347 (61%), Gaps = 13/347 (3%) Query: 1 MDEPTAALSERETEHLFGVVKRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELA 60 +DEPTA L+ E EHLF V++ LR +G+AII+ISH + E++ + DR+TVLRDG++V A Sbjct: 166 LDEPTATLTPAEVEHLFAVMRSLRAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCA 225 Query: 61 REEIDSERIVQMMVGRSLGEFYQHTRMAPERAAAL-----PVVLQVQDLAGGKVRPAS-F 114 E+D R+V+MMVGR + + P + A VVL+V L + P S F Sbjct: 226 TAEVDQARLVEMMVGRRIENCF------PPKPAKGGEGEGEVVLEVHALQLRRQAPVSQF 279 Query: 115 AVRAGEVLGFAGLVGAGRTELARLLFGADARSGGHVLLDGQVVHIDEPRAAMRAGIAYVP 174 +R GE+LGFAGLVG+GRTE + GA A + + G + +P A++AGI +P Sbjct: 280 QLRRGEILGFAGLVGSGRTETVLAMLGAHAALSCKLSMHGVPLRFADPAQALQAGIGLLP 339 Query: 175 EDRKGQGLFLQMAVGANATMNVAGRHSTAGLVRSGALDGVARDA-IQRLNVKVAHPGVAV 233 E RK QGL ++ N ++N G++ GL + A +A +QR+ VK V V Sbjct: 340 ESRKEQGLITSFSILHNVSLNNYGKYRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVRV 399 Query: 234 GKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVISS 293 LSGGNQQKV++ARW+ A KVLI DEPTRG+D+ AKSEIYQL+ + QG ++++ISS Sbjct: 400 DTLSGGNQQKVVIARWINHAMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISS 459 Query: 294 ELPEVIGICDRVLVMREGSITGELAGAAITQEAIMHLATDAGGMHGA 340 ELPEV+G+ DRV V R G I L G A+ E IM AT H A Sbjct: 460 ELPEVVGMADRVCVFRGGGIVATLEGEAVNAEEIMTHATTGRIRHAA 506 Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 7/223 (3%) Query: 109 VRPASFAVRAGEVLGFAGLVGAGRTELARLLFGADARSGGHVLLDGQVVHIDEPRAAMRA 168 +R VRAGEV G GAG++ L ++L G G + +DGQ D RAA+ Sbjct: 21 LRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRIDGQPCRFDSYRAAIAG 80 Query: 169 GIAYVPEDRKGQGLFLQMAVGANATMNVAGR-HSTAGLVRSGALDGVARDAIQRLNVKVA 227 G+ V ++ L + A M +A S G ++ A+ A++ I +L V + Sbjct: 81 GVGVVFQE-----FSLIPYLDAVDNMFLARELRSRWGWLQRAAMRRRAQEIIGQLGVAIP 135 Query: 228 HPGVAVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHKLAEQGVA 287 V V KLS QQ V +A+ L + ++L+LDEPT + ++ ++ L QGVA Sbjct: 136 L-DVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLFAVMRSLRAQGVA 194 Query: 288 VVVISSELPEVIGICDRVLVMREGSITGELAGAAITQEAIMHL 330 ++ IS L E+ ICDR+ V+R+G+ A A + Q ++ + Sbjct: 195 IIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVEM 237 >gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 522 Score = 261 bits (667), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 151/331 (45%), Positives = 208/331 (62%), Gaps = 8/331 (2%) Query: 1 MDEPTAALSERETEHLFGVVKRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELA 60 +DEPTA L+ RE E LF ++RLR EG+AIIYISHR+ E+ +ADR+ VLRDG V Sbjct: 173 LDEPTAMLTNREVELLFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDD 232 Query: 61 REEIDSERIVQMMVGRSLGEFYQHTRMAPERAAALPVVLQVQDLAGGKV-RPASFAVRAG 119 +E++VQ+M G E + A R PV L+++ L V PAS A+ AG Sbjct: 233 IGRYSTEQLVQLMAG----ELTKVDLDAEHRRIGAPV-LRIRGLGRAPVVHPASLALHAG 287 Query: 120 EVLGFAGLVGAGRTELARLLFGADARSGGHVLL-DGQ-VVHIDEPRAAMRAGIAYVPEDR 177 EVLG AGL+G+GRTEL RL+FGAD G + + D Q I P+ A++AGIA V EDR Sbjct: 288 EVLGIAGLIGSGRTELLRLIFGADRAEQGEIFIGDSQEPARIRSPKDAVKAGIAMVTEDR 347 Query: 178 KGQGLFLQMAVGANATMNVAGRHSTAGLVRSGALDGVARDAIQRLNVKVAHPGVAVGKLS 237 KGQGL L A+ N ++ G S G++ A VA+D +++L ++ A G+LS Sbjct: 348 KGQGLLLPQAISVNTSLANLGSVSRGGMLDHAAESSVAQDYVKKLRIRSGSVAQAAGELS 407 Query: 238 GGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVISSELPE 297 GGNQQKV++ARWL +++ DEPTRG+DI AKS+IY+L +LA QG ++V+SS+L E Sbjct: 408 GGNQQKVVIARWLYRDCPIMLFDEPTRGIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRE 467 Query: 298 VIGICDRVLVMREGSITGELAGAAITQEAIM 328 ++ ICDR+ VM G I + +QE I+ Sbjct: 468 LMQICDRIAVMSAGRIADTFSRDDWSQERIL 498 Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 5/198 (2%) Query: 116 VRAGEVLGFAGLVGAGRTELARLLFGADARSGGHVLLDGQVVHIDEPRAAMRAGIAYVPE 175 +R G+VL G GAG++ L++++ G S G ++LDGQ A GI V + Sbjct: 35 LRPGQVLALTGENGAGKSTLSKIICGLVDASAGGMMLDGQPYAPASRTQAEGLGIRMVMQ 94 Query: 176 DRKGQGLFLQMAVGANATMNVAGRHSTAGLVRSGALDGVARDAIQRLNVKVAHPGVAVGK 235 + L +++ N + R G + L AR ++ + + P VG Sbjct: 95 ELN---LIPTLSIAENLFLEKLPRR--FGWIDRKKLAEAARAQMEVVGLGELDPWTPVGD 149 Query: 236 LSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVISSEL 295 L G+QQ V +AR L + + LILDEPT + ++ + +L +GVA++ IS L Sbjct: 150 LGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNREVELLFSRIERLRAEGVAIIYISHRL 209 Query: 296 PEVIGICDRVLVMREGSI 313 E+ I DR++V+R+G + Sbjct: 210 EELKRIADRIVVLRDGKL 227 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 259 bits (662), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 144/343 (41%), Positives = 212/343 (61%), Gaps = 16/343 (4%) Query: 1 MDEPTAALSERETEHLFGVVKRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELA 60 +DEP+++L+ E L ++K L+ G+A +YISH++ EV + D ++V+RDG + Sbjct: 169 LDEPSSSLTASEIGVLLKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTP 228 Query: 61 REEIDSERIVQMMVGRSLGEFYQHTRMAPERAAAL-PVVLQVQDLAG--------GKVRP 111 +E+D ++I+ MVGR + T M PER A+ VVL+ +++ +V Sbjct: 229 MQEMDVDKIITQMVGREI------TAMYPERNHAIGEVVLEARNITCYDIDNPRRKRVDD 282 Query: 112 ASFAVRAGEVLGFAGLVGAGRTELARLLFGA-DARSGGHVLLDGQVVHIDEPRAAMRAGI 170 SF+VR GE+LG AGLVGAGRTEL +FGA R G VLL+G+ P ++R G+ Sbjct: 283 VSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIRRGL 342 Query: 171 AYVPEDRKGQGLFLQMAVGANATMNVAGRHSTAGLVRSGALDGVARDAIQRLNVKVAHPG 230 VPEDRK G+ + VG N T+ V R S + A +D I R+ VK A P Sbjct: 343 CMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPF 402 Query: 231 VAVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVV 290 + + LSGGNQQK +LA+ L PKVLILDEPTRGVD+ AK+EIY+L+ +LA+ G+A+++ Sbjct: 403 LPITSLSGGNQQKAVLAKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIM 462 Query: 291 ISSELPEVIGICDRVLVMREGSITGELAGAAITQEAIMHLATD 333 +SSEL EV+G+ DRVLV+ EG + G+ ++QE ++ A + Sbjct: 463 VSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQETVLAAAIN 505 Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 20/209 (9%) Query: 113 SFAVRAGEVLGFAGLVGAGRTELARLLFGADARSG--GHVLLDGQVVHIDEPRAAMRAGI 170 +R GE +G G GAG++ L ++L G G +L DG+ + R AGI Sbjct: 25 DIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEILWDGKPLQAHSVRDTEAAGI 84 Query: 171 A-------YVPEDRKGQGLFLQMAVGANATMNVAGRHSTAGLVRSGALDGVARDAIQRLN 223 VPE + +F+ G T+ GR + + R A + ++ LN Sbjct: 85 VIIHQELMLVPELSVAENIFM----GHEITLP-GGRMNYPAMYRR------AEELMRELN 133 Query: 224 VKVAHPGVAVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHKLAE 283 + + + V + GG+QQ V +A+ L ++LILDEP+ + + +++ L Sbjct: 134 MPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIGVLLKIIKDLKA 193 Query: 284 QGVAVVVISSELPEVIGICDRVLVMREGS 312 +GVA V IS +L EV +CD + V+R+G Sbjct: 194 RGVACVYISHKLDEVAEVCDTISVIRDGK 222 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,100,248 Number of extensions: 50785 Number of successful extensions: 634 Number of sequences better than 1.0e-08: 97 Number of HSP's gapped: 540 Number of HSP's successfully gapped: 116 Length of query: 364 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 278 Effective length of database: 1,212,660 Effective search space: 337119480 Effective search space used: 337119480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)