BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0041.p (175 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 223 7e-60 gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [H... 118 2e-28 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 118 3e-28 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 113 1e-26 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 112 1e-26 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 223 bits (568), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 115/139 (82%), Positives = 119/139 (85%), Gaps = 8/139 (5%) Query: 4 MTSTPILQMTGISKSFGATRALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDD 63 MT TP+LQM GI KSFGAT ALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPD Sbjct: 1 MTQTPLLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQ 60 Query: 64 GEILLDGKPVSLRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGLIDHAEG 123 GEILLDG+PV+LRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTR GLIDHA Sbjct: 61 GEILLDGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLGLIDHA-- 118 Query: 124 GGGXARAHRCRPPPIGRQL 142 A R R + RQL Sbjct: 119 ------AMRSRTDAVLRQL 131 >gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 516 Score = 118 bits (296), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 57/112 (50%), Positives = 84/112 (75%), Gaps = 1/112 (0%) Query: 8 PILQMTGISKSFGATRALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDDGEIL 67 P+L+++GI K+F +AL+D+ L + PGE+H LMG+NGAGKSTL+KVL+GVH PD G+I Sbjct: 11 PMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDGGKIE 70 Query: 68 LDGKPVSLRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGLID 119 LDG+ ++ ++A GI+ +YQE+ + PN+SVA N+F+G TR+G ID Sbjct: 71 LDGRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVG-RYPTRFGRID 121 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 118 bits (295), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 76/113 (67%) Query: 9 ILQMTGISKSFGATRALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDDGEILL 68 +LQ+TGI K+FG L + L +R GE+HAL+GENGAGKSTLMK+L G+ PD GEI + Sbjct: 5 MLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRI 64 Query: 69 DGKPVSLRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGLIDHA 121 DG+P A+ A G+ +++QE ++ P + N+F+ ELR+RWG + A Sbjct: 65 DGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRA 117 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 113 bits (282), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 1/116 (0%) Query: 8 PILQMTGISKSFGATRALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDDGEIL 67 P++ + + K F AL + + GE+HALMGENGAGKSTLMK+LSGV+ D G+IL Sbjct: 21 PVIALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDIL 80 Query: 68 LDGKPVSLRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGL-IDHAE 122 LDGKPV + +P ++A GI +I+QEL + ++S A N+F+G E R GL ID E Sbjct: 81 LDGKPVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDE 136 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 112 bits (281), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 60/108 (55%), Positives = 75/108 (69%), Gaps = 2/108 (1%) Query: 6 STPILQMTGISKSFGATRALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGV--HAPDD 63 S +L+M GI KSFG RAL+ + + IRPGE L GENGAGKSTLMK+LSGV H + Sbjct: 2 SEYLLEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWE 61 Query: 64 GEILLDGKPVSLRDPGASRAAGINLIYQELAVAPNISVAANVFMGSEL 111 GEIL DGKP+ + AAGI +I+QEL + P +SVA N+FMG E+ Sbjct: 62 GEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEI 109 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 601,693 Number of extensions: 25716 Number of successful extensions: 259 Number of sequences better than 1.0e-08: 78 Number of HSP's gapped: 263 Number of HSP's successfully gapped: 79 Length of query: 175 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 96 Effective length of database: 1,245,805 Effective search space: 119597280 Effective search space used: 119597280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)