BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0038.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein [He...   307   4e-85
gi|300313872|ref|YP_003777964.1| 2,3-dihydro-2,3-dihydroxybenzoa...    66   2e-12
gi|300310658|ref|YP_003774750.1| 2,3-dihydro-2,3-dihydroxybenzoa...    58   6e-10

>gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score =  307 bits (787), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 162/197 (82%), Positives = 174/197 (88%)

Query: 1   MSSPQTLIQIAGGSARAATWQEAVLLIIDHQTEYTTGRAPLAGIDAAVGQIAELLRQARA 60
           MS+PQTLIQIAGGS RAATWQEA L+IIDHQTEYTTGRAPLAGI AAV ++A LL  ARA
Sbjct: 1   MSTPQTLIQIAGGSPRAATWQEAALVIIDHQTEYTTGRAPLAGIGAAVAEVALLLEHARA 60

Query: 61  AGAPVIHIVHHSKPGSAMFDPQGPHVAIIDGVQPQGEELVLPKGLPNAFAGTALDEAIKN 120
           A APVIH+VHH KPG AMFDPQGPHVAIIDGVQPQ  E V+ KGLPN+FAGT LDE +K 
Sbjct: 61  AAAPVIHVVHHGKPGGAMFDPQGPHVAIIDGVQPQPGEAVITKGLPNSFAGTTLDETLKK 120

Query: 121 TGRKSLIVTGFATHMCVSATVRSALDHGYASTVVAAACATRDLPDPLGGAPVTAAEVQRV 180
           TGRKSLI+ GFATHMCVSATVRSALDHGYA TVVAAACATRDLPDPLGG  ++AAE+QRV
Sbjct: 121 TGRKSLIIAGFATHMCVSATVRSALDHGYACTVVAAACATRDLPDPLGGPALSAAEIQRV 180

Query: 181 ALTELADRYATVVADAG 197
           AL ELADRYATVVA AG
Sbjct: 181 ALAELADRYATVVAHAG 197


>gi|300313872|ref|YP_003777964.1| 2,3-dihydro-2,3-dihydroxybenzoate
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 176

 Score = 65.9 bits (159), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 67/136 (49%), Gaps = 3/136 (2%)

Query: 25  LLIIDHQTEYTTGRAPLAGIDAAVGQIAELLRQARAAGAPVIHIVHHSKPGSAMFDPQGP 84
           LLIID Q     G   +    A + ++ +L  QARAAGAPVI  V H    +     +G 
Sbjct: 5   LLIIDIQHALCHGPDAVENSAAVIDRVNQLADQARAAGAPVI-FVQHEDEDALQRGSEG- 62

Query: 85  HVAIIDGVQPQGEELVLPKGLPNAFAGTALDEAIKNTGRKSLIVTGFATHMCVSATVRSA 144
              ++ G+  Q E+L LPK   +AF  T L   +K     +L++ G  T  CV +TVR A
Sbjct: 63  -WQLMPGLHQQPEDLHLPKRGSDAFHHTELQAMLKMRHISALVICGMQTEYCVESTVRRA 121

Query: 145 LDHGYASTVVAAACAT 160
           L  GY   + A A  T
Sbjct: 122 LALGYPVMLAADAHTT 137


>gi|300310658|ref|YP_003774750.1| 2,3-dihydro-2,3-dihydroxybenzoate
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score = 57.8 bits (138), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 14/153 (9%)

Query: 25  LLIIDHQTEYTTGRAPLAG-IDAAVGQIAELLRQARAAGAPVIH-------------IVH 70
           LLI+D    +   +    G I  A+ +   LL  AR  G PV H             I  
Sbjct: 25  LLIVDFVNSFADPQQFGGGNIPQAIERTRSLLAHARQQGWPVAHSRIVFADDDADRNIFG 84

Query: 71  HSKPGSAMFDPQGPHVAIIDGVQPQGEELVLPKGLPNAFAGTALDEAIKNTGRKSLIVTG 130
              PG        P  AI+  + P   ELV+ K +P+AF GT+L   +   G ++L+V G
Sbjct: 85  MKVPGMVTLKEDLPGSAIVPQLAPANGELVVRKTVPSAFFGTSLAPWLTQHGVQTLLVAG 144

Query: 131 FATHMCVSATVRSALDHGYASTVVAAACATRDL 163
             T  CV A+V  A+  G+   VV+     R L
Sbjct: 145 AVTSGCVRASVVDAMSWGFRPLVVSDCVGDRAL 177


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 673,532
Number of extensions: 28502
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 3
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)