BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0037.p (287 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310059|ref|YP_003774151.1| LysR family transcription regul... 471 e-134 gi|300312300|ref|YP_003776392.1| LysR family transcription regul... 125 4e-30 gi|300312373|ref|YP_003776465.1| LysR family transcription regul... 114 1e-26 gi|300310322|ref|YP_003774414.1| LysR family transcription regul... 102 4e-23 gi|300312785|ref|YP_003776877.1| transcription regulator protein... 100 1e-22 >gi|300310059|ref|YP_003774151.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 471 bits (1211), Expect = e-134, Method: Compositional matrix adjust. Identities = 233/283 (82%), Positives = 253/283 (89%) Query: 5 LDADWESLRSFAAFVEAGSLSGAARALGVTHATIGRRLQLLEEALQGPLYLRRAEDVELT 64 + ADWESLRSFAAFV+AGS SGAAR LGVTHATIGRRLQ LE+ L PL++RRA+D+ELT Sbjct: 1 MHADWESLRSFAAFVDAGSFSGAARVLGVTHATIGRRLQQLEQTLAAPLFIRRADDIELT 60 Query: 65 RLGESVLTAARAMQEQTRQLARTLAGGDLRLEGKLRLACTDAIGTMFLAPRLPALLEQWP 124 RLGESVL AARAMQ+QTRQLARTLAG DLR+EGKLRLACTDA+GT+FLAPRLP+LL+QWP Sbjct: 61 RLGESVLAAARAMQDQTRQLARTLAGEDLRMEGKLRLACTDAMGTLFLAPRLPSLLQQWP 120 Query: 125 ALDVEFALGHQTLSLARREADLALRFGKPQDGELIARPLGAVRFYLCGTADNVALWRRAR 184 ALD+E A+GHQTLSLARREADLALRF +PQDGELIAR LG VRFYLCGTAD VA WR R Sbjct: 121 ALDIELAMGHQTLSLARREADLALRFARPQDGELIARRLGVVRFYLCGTADQVAAWRHQR 180 Query: 185 KTAPFVAYDDGVPDIPETRWIADHAAGNPVRLRSTSLVAQCMAARAGVGLALLPSYLLAP 244 +AP + YDD VPDIPETRW+A HA GNPVRLRS SLVAQCMAARAGVGLALLPSYLLAP Sbjct: 181 GSAPVIGYDDSVPDIPETRWLAAHADGNPVRLRSASLVAQCMAARAGVGLALLPSYLLAP 240 Query: 245 ELQTVESAPQLQRELWAVFHRDLKTLPRLRAVLAWLQDCCAQL 287 ELQTVES PQL RELWAVFHRDLK LPRLRAVL WLQ CC +L Sbjct: 241 ELQTVESTPQLVRELWAVFHRDLKALPRLRAVLEWLQACCGEL 283 >gi|300312300|ref|YP_003776392.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 125 bits (314), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 136/277 (49%), Gaps = 8/277 (2%) Query: 9 WESLRSFAAFVEAGSLSGAARALGVTHATIGRRLQLLEEALQGPLYLRRAEDVELTRLGE 68 W+ +R F GSLS +AR L V H+T+ R + LE+ L+ L+ R A LT G Sbjct: 25 WDDVRYFLTLSREGSLSASARVLKVEHSTVARHVGNLEKTLRVKLFDRLARGWVLTTEGA 84 Query: 69 SVLTAARAMQEQTRQLARTLAGGDLRLEGKLRLACTDAIGTMFLAPRLPALLEQWPALDV 128 + A ++ + L R A + L GK+R++ + + FL PRLPA E++P +++ Sbjct: 85 ELSKQAEQLEVEMHSLWRA-ALANTTLSGKVRVSAPPILMSDFLVPRLPAFQEKYPDIEL 143 Query: 129 EFALGHQTLSLARREADLALRFGKPQDGELIARPLGAVRFYLCGTADNVALWRRARKTAP 188 E + + L R EAD+ALR G+P L+AR L V + + G A R Sbjct: 144 EVIGEARGVDLTRGEADIALRMGEPVSPLLVARMLCNVSYSVYGIP---AWLERPESERS 200 Query: 189 FVAYDDGVPDIPETRWIADHAAGNPVRLRSTSLVAQCMAARAGVGLALLPSYLLAPELQT 248 F+ D P + W+ LR+ + A C AA +G+GLALLP +++A + + Sbjct: 201 FIGLDQESP-CRQKAWLESQVDQRRYALRTNDIRAMCHAAMSGIGLALLPRFMVAEDTRL 259 Query: 249 V---ESAPQLQRELWAVFHRDLKTLPRLRAVLAWLQD 282 V L+ V H D++ PR+RA +L D Sbjct: 260 VAIPMPETPPPCPLYLVMHSDVRRAPRIRATADFLID 296 >gi|300312373|ref|YP_003776465.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 138/293 (47%), Gaps = 24/293 (8%) Query: 8 DWESLRSFAAFVEAGSLSGAARALGVTHATIGRRLQLLEEALQGPLYLRRAEDVELTRLG 67 DW++LR F + L AA+ LG+ H+T+ RR++ EE + L+ R +LT G Sbjct: 3 DWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADG 62 Query: 68 ESVLTAARAMQEQTRQLARTLAGGDLRLEGKLRLACTDAIGTMFLAPRLPALLEQWPALD 127 ++ A ++ L G + +L G++RL T+ GT LAP + + P + Sbjct: 63 YRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHIT 122 Query: 128 VEFALGHQTLSLARREADLALRFGKPQDGELIARPLG-------AVRFYL-----CGTAD 175 V+ + ++L++ EAD+++ +P G + L A R YL T D Sbjct: 123 VDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTMD 182 Query: 176 NVALWRRARKTAPFVAYDDGVPDIPETRWIADHAAGNPVR-LRSTSLVAQCMAARAGVGL 234 ++A F+ Y D + E R+ D A + R RSTS+VAQ AA AG L Sbjct: 183 DLA-------QHHFIGYIDDLVFSEELRY-KDTVAPDAFRAFRSTSVVAQYTAACAGRAL 234 Query: 235 ALLPSYLLAPELQTVESAPQ---LQRELWAVFHRDLKTLPRLRAVLAWLQDCC 284 A+LP +L + PQ + R W V + + + R+ A+ ++L++C Sbjct: 235 AILPCFLAQQSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYLRECV 287 >gi|300310322|ref|YP_003774414.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 102 bits (254), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 128/278 (46%), Gaps = 11/278 (3%) Query: 8 DWESLRSFAAFVEAGSLSGAARALGVTHATIGRRLQLLEEALQGPLYLRRAEDVELTRLG 67 DW++ R F A G+L GAA L + AT+GRRL LE +L L+LR T G Sbjct: 2 DWDNARIFLAIYRVGTLRGAAETLELDQATVGRRLAALERSLGARLFLRTPNGYVPTPAG 61 Query: 68 ESVLTAARAMQEQTRQLARTLAGGDLRLEGKLRLACTDAIGTMFLAPRLPALLEQWPALD 127 E AA+ M++ QL R + G D RL G +RLA TD FL P L L ++ P + Sbjct: 62 EMAAAAAQQMEQGAEQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHIR 121 Query: 128 VEFALGHQTLSLARREADLALRFGKPQDGELIARPLGAVRFYLCGTADNVALWRR----- 182 V + Q +L +READ+A+R +P +LIAR L R + A + +R Sbjct: 122 VVLSTSTQITNLTKREADIAVRTLRPDAPDLIARHLK--RLHTAIYASRSYVKKRGLPEP 179 Query: 183 --ARKTAPFVAYDDGVPDIPETRWIADHAAGNPVRLRSTSLVAQCMAARAGVGLALLPSY 240 K V Y V + + V + ++ + +AG GL LP++ Sbjct: 180 GTGLKGHDVVIYQRSVSPAKSEQICGESIINAQVAMEVSTGLVMYDCLQAGFGLGELPTH 239 Query: 241 LLAPELQTVESAPQLQR--ELWAVFHRDLKTLPRLRAV 276 + V PQ + ++W V H DL R+RAV Sbjct: 240 VGDKASGLVRVWPQRETPYDMWLVLHSDLNRTARVRAV 277 >gi|300312785|ref|YP_003776877.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 100 bits (249), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 10/287 (3%) Query: 3 AALDADWESLRSFAAFVEAGSLSGAARALGVTHATIGRRLQLLEEALQGPLYLRRAEDVE 62 A ++ +WE RSF +E GSLS A R +G+T T+GR ++ LE L L++R + Sbjct: 2 ADIEPNWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFS 61 Query: 63 LTRLGESVLTAARAMQEQTRQLARTLAGGDLRLEGKLRLACTDAIGTMFLAPRLPALLEQ 122 T + A A+ + L R + + G +RL ++ I L P L AL + Sbjct: 62 PTDAALELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRHR 121 Query: 123 WPALDVEFALGHQTLSLARREADLALRFGKPQDGELIARPLGAVRFYLCGTADNVALWRR 182 P L VE L ++ L +READ+A+R +P L+A+ LG++ L + + Sbjct: 122 HPELRVELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLTV-HG 180 Query: 183 ARKTAPFVAYDDGVPDIPETRWIADHAAGNP------VRLRSTSLVAQCMAARAGVGLAL 236 A K+ +A + E+ ++ + P + LR+ S +AQ A RAG G+ + Sbjct: 181 APKSVDALADHTLIGFDQESAYVRNVLKQIPWLSRAALALRTDSDLAQLAAIRAGFGIGI 240 Query: 237 LPSYLLAPELQTVESAPQ---LQRELWAVFHRDLKTLPRLRAVLAWL 280 L A ++ V P+ L+ E W H DL+ PR A L Sbjct: 241 CQVALAARDVALVRLLPRQFALKMETWVAMHEDLRASPRCAVTFAAL 287 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 905,277 Number of extensions: 37554 Number of successful extensions: 269 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 263 Number of HSP's successfully gapped: 35 Length of query: 287 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 203 Effective length of database: 1,222,130 Effective search space: 248092390 Effective search space used: 248092390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 130 (54.7 bits)