BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0025.p
         (537 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310051|ref|YP_003774143.1| glycyl-tRNA synthetase beta cha...  1011   0.0  

>gi|300310051|ref|YP_003774143.1| glycyl-tRNA synthetase beta chain
           protein [Herbaspirillum seropedicae SmR1]
          Length = 706

 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/537 (94%), Positives = 525/537 (97%)

Query: 1   VHFVRPAHYLVALLGNDVVPINTLGLDAGRTTLGHRFLSSGVLQIASPDAYVEALATQGK 60
           VHFVRPAHYLVALLGNDVVPINTLGLDAGRTTLGHRFLS+G LQIA+PDAYVE+LA QG 
Sbjct: 170 VHFVRPAHYLVALLGNDVVPINTLGLDAGRTTLGHRFLSAGALQIAAPDAYVESLAQQGN 229

Query: 61  VIASFTERREKIRTALLAKAGGDQVLMPDSLLDEVTALVEWPVVYECKFEDEFLAVPQEC 120
           VIASFTERREKIR ALLAKAG DQVLMP++LLDEVTALVEWPVVYECKFEDEFLAVPQEC
Sbjct: 230 VIASFTERREKIRAALLAKAGADQVLMPEALLDEVTALVEWPVVYECKFEDEFLAVPQEC 289

Query: 121 LILTMQTNQKYFALTDADGKLRSRFLIVSNLETDRPEHIIGGNERVVRPRLSDAKFFFEQ 180
           LILTMQTNQKYFALTDA+G+LRSRFLIVSNLET  PEHIIGGNERVVRPRLSDAKFFFEQ
Sbjct: 290 LILTMQTNQKYFALTDANGRLRSRFLIVSNLETAHPEHIIGGNERVVRPRLSDAKFFFEQ 349

Query: 181 DKKKSLADRVPQLANVVYHNKLGNQLQRTERVQALAGKIASLLGGDVKQAERGALLAKAD 240
           DKKK+LA+RVPQLANVVYHNKLGNQLQRTERVQALAGKIASLLGGDVK AERGALLAKAD
Sbjct: 350 DKKKTLAERVPQLANVVYHNKLGNQLQRTERVQALAGKIASLLGGDVKLAERGALLAKAD 409

Query: 241 LLTDMVGEFPELQGIMGTYYARHDGESDEVALAASEHYQPRFAGDALPATATGTAVALAD 300
           LLTDMVGEFPELQGIMGTYYARHDGE+DEVALAASEHYQPRFAGDALP TATGTAVALAD
Sbjct: 410 LLTDMVGEFPELQGIMGTYYARHDGEADEVALAASEHYQPRFAGDALPTTATGTAVALAD 469

Query: 301 KLETLVGIWGIGLQPTGDKDPFALRRHALGVLRMLVEKRLPLSLSALLDATAGLFAGNAN 360
           KLETLVGIWGIGLQPTGDKDPFALRRHALGVLRMLVEKRLPLSL+ALLDA  GLFAGNAN
Sbjct: 470 KLETLVGIWGIGLQPTGDKDPFALRRHALGVLRMLVEKRLPLSLTALLDAATGLFAGNAN 529

Query: 361 FKDPRADVQAFIYDRLRGLLRERGFAQNEVEAVVAQQPDVLDNVVERLQAVQAFAALPEA 420
           FKDPRADVQAFIYDRLRGLLRERGFAQNEVEAVVAQQP+VLDNVVERLQAVQAFAALPEA
Sbjct: 530 FKDPRADVQAFIYDRLRGLLRERGFAQNEVEAVVAQQPEVLDNVVERLQAVQAFAALPEA 589

Query: 421 EALAAANKRITNILKKIEGVAIDAHGAVQENLLQEAAEQGLFAAMQTTRPQVQAAYAAGD 480
           EALAAANKRITNILKKIEGVAIDAHGAVQE+LLQEAAEQGLFAAMQTTRPQV+AAYA GD
Sbjct: 590 EALAAANKRITNILKKIEGVAIDAHGAVQESLLQEAAEQGLFAAMQTTRPQVEAAYAKGD 649

Query: 481 FAGALKALAQLRENVDAFFNDVMVNAEDEQLRKNRQALLASLHGMLNQVADISKLAA 537
           FAGALKALAQLR+NVDAFFNDVMVNAEDEQLRKNRQALLA+LHGMLNQVADISKLAA
Sbjct: 650 FAGALKALAQLRQNVDAFFNDVMVNAEDEQLRKNRQALLAALHGMLNQVADISKLAA 706


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,520,578
Number of extensions: 62309
Number of successful extensions: 237
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 447
Effective length of database: 1,193,720
Effective search space: 533592840
Effective search space used: 533592840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)