BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0024.p
         (193 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310050|ref|YP_003774142.1| histidinol phosphatase [Herbasp...   359   e-100
gi|300313701|ref|YP_003777793.1| histidinol phosphatase [Herbasp...   110   9e-26

>gi|300310050|ref|YP_003774142.1| histidinol phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score =  359 bits (921), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/193 (93%), Positives = 180/193 (93%), Gaps = 8/193 (4%)

Query: 1   MKLIILDRDGVINQDSDAFIKSPDEWIPIKGSLEAIARLNQAGYRVVVATPTXIRVATNQ 60
           MKLIILDRDGVINQDSDAFIKSPDEWIPIKGSLEAIARLNQAGYRVVVAT        NQ
Sbjct: 1   MKLIILDRDGVINQDSDAFIKSPDEWIPIKGSLEAIARLNQAGYRVVVAT--------NQ 52

Query: 61  SGVARGLFDIKTLNAIHQKMHNAAQQAGADIDAVFFCPHSADDNCDCRKPKPGMFHEIAK 120
           SGVARGLFDIKTLNAIHQKMH AAQQAGADIDAVFFCPHSADDNCDCRKPKPGMFHEIAK
Sbjct: 53  SGVARGLFDIKTLNAIHQKMHTAAQQAGADIDAVFFCPHSADDNCDCRKPKPGMFHEIAK 112

Query: 121 RFNISLRGGVATVGDSLRDLQAGYVAGCAPYLVLTGKGEKTQAKGGLPPGTLVFPDLSAV 180
           RFNISLRGGV TVGDSLRDLQAGYVAGCAP LVLTGKGEKTQAKGGLPPGTLVFPDLSAV
Sbjct: 113 RFNISLRGGVVTVGDSLRDLQAGYVAGCAPCLVLTGKGEKTQAKGGLPPGTLVFPDLSAV 172

Query: 181 VDFILKSPVGVSV 193
           VDFILK  VGVSV
Sbjct: 173 VDFILKPVVGVSV 185


>gi|300313701|ref|YP_003777793.1| histidinol phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 196

 Score =  110 bits (274), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 18/189 (9%)

Query: 4   IILDRDGVINQDSDAFIKSPD-EWIPIKGSLEAIARLNQAGYRVVVATPTXIRVATNQSG 62
           + +DRDG +N + +   +  D EWIP  GS+E + +L+ AG+  +V T        NQ+G
Sbjct: 9   VFIDRDGTLNVEKNYLHRYEDWEWIP--GSVEMLMQLHAAGFLNIVVT--------NQAG 58

Query: 63  VARGLFDIKTLNAIHQKMHNAAQQAGADIDAVFFCPHSADD----NCDCRKPKPGMFHEI 118
           VARG +D + ++ +H ++     +A   IDA + CPH        +CDCRKP PGM    
Sbjct: 59  VARGYYDEQAISRLHAQVDAGMGEAAGCIDAYYHCPHHPLHGQVRDCDCRKPAPGMLLRA 118

Query: 119 AKRFNISLRGGVATVGDSLRDLQAGYVAGCAPYLVLTGKGEKTQAKGGLPPGTLVFPDLS 178
            + +NI L      VGD L D+QAG   G    LV TG G   + +   PPG L+  D +
Sbjct: 119 QREWNIDLSRSW-MVGDKLSDIQAGLAVGARCVLVATGYGR--EERDHCPPGVLLADDFA 175

Query: 179 AVVDFILKS 187
                IL+ 
Sbjct: 176 RAGALILRE 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 609,470
Number of extensions: 23797
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 2
Length of query: 193
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 113
Effective length of database: 1,241,070
Effective search space: 140240910
Effective search space used: 140240910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)