BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0023.p
         (261 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310049|ref|YP_003774141.1| 1-acyl-sn-glycerol-3-phosphate ...   496   e-142
gi|300312599|ref|YP_003776691.1| major facilitator superfamily p...    56   3e-09

>gi|300310049|ref|YP_003774141.1| 1-acyl-sn-glycerol-3-phosphate
           acyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  496 bits (1277), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/249 (95%), Positives = 245/249 (98%)

Query: 1   MGETILRLVLILRSVVFMVLMAVATIIWSFACLLSAPFPYAQRYWWTSRWNVFVIWTARV 60
           MGETILRLVLILRSVVFM LMAVATIIWSFACLLSAPFPYAQRYWWTSRWNVFVIWTARV
Sbjct: 1   MGETILRLVLILRSVVFMALMAVATIIWSFACLLSAPFPYAQRYWWTSRWNVFVIWTARV 60

Query: 61  ICGIRYEMRGTENLPDAPVILLSKHQSAWETIFYVINMPRPLVFVFKKELTYVPFFGWGI 120
           ICGIRYE+RG ENLPDAPVILLSKHQSAWETIFYVINMPRPLVFVFKKELTYVPFFGWGI
Sbjct: 61  ICGIRYEIRGAENLPDAPVILLSKHQSAWETIFYVINMPRPLVFVFKKELTYVPFFGWGI 120

Query: 121 ALLRMIPIDRKKGRDAFAQVLEHGRRRLRDGQWIMMFPEGTRTPVGSQGKYKAGGSRLAV 180
           ALLRMIPIDRKKGRDAFAQVLEHG RRLRDGQWIMMFPEGTRT VGSQGKYKAGGSRLAV
Sbjct: 121 ALLRMIPIDRKKGRDAFAQVLEHGTRRLRDGQWIMMFPEGTRTTVGSQGKYKAGGSRLAV 180

Query: 181 ETNTLVVPVAVNSGECWPKGSFVKKPGVITVSIGKPISPEGLNPQELNERVENWIESEMR 240
           ETNTLVVP+A+NSG+CWPKGSF+KKPG+ITVSIGKPISPEGLNPQELNERVENWIESEMR
Sbjct: 181 ETNTLVVPIAMNSGQCWPKGSFIKKPGLITVSIGKPISPEGLNPQELNERVENWIESEMR 240

Query: 241 VISPDVYKN 249
           VISPDVYKN
Sbjct: 241 VISPDVYKN 249


>gi|300312599|ref|YP_003776691.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 629

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 28/187 (14%)

Query: 65  RYEMRGTENLPD-APVILLSKHQSAWETIFYVINMPRPLVFVFKKELTYVPFFGWGIALL 123
           R  +   + +P+  P +L+  H S  + I  +   PRP+ FV   ++  +P   W    +
Sbjct: 443 RVRIINGQAIPEQGPAVLVCNHVSYVDAIAIMAASPRPVRFVMDHQIFRIPVMSWLFRNV 502

Query: 124 RMIPIDRKK-----GRDAFAQVLEHGRRRLRDGQWIMMFPEGTRTPVGSQGKYKAGGSRL 178
           R IPI   K        AF  +     + L +G+ + +FPEG  T  G    +K G  ++
Sbjct: 503 RAIPIAPVKEDPWLTEKAFVDI----AQALHEGELVCIFPEGKLTRDGELNPFKGGVQKI 558

Query: 179 AVETNTLVVPVAVNS--------------GECWPKGSFVKKPGVITVSIGKPISPEGLNP 224
              +   V+P+A+                   + +G F +    + +++G+ I PE ++P
Sbjct: 559 IARSPVPVLPMALRGLWGSLFSRDPSNPVARTFKRGLFSR----LELAVGEAIPPEQVSP 614

Query: 225 QELNERV 231
           + L E+V
Sbjct: 615 ELLQEKV 621


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 833,977
Number of extensions: 35168
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 261
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 178
Effective length of database: 1,226,865
Effective search space: 218381970
Effective search space used: 218381970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)