BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0020.p
         (707 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310047|ref|YP_003774139.1| TonB-dependent copper receptor ...  1181   0.0  

>gi|300310047|ref|YP_003774139.1| TonB-dependent copper receptor
           protein [Herbaspirillum seropedicae SmR1]
          Length = 709

 Score = 1181 bits (3054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/713 (81%), Positives = 625/713 (87%), Gaps = 10/713 (1%)

Query: 1   MQLTPCACAIALAFSACGHALAQTTSDAADAPLPTVTVRGDKPAATAPLNADSAALLAAQ 60
           MQ TPCACAIALAF+ CG   A   S     PLP +TVRG KP+ T P +ADSAALL  Q
Sbjct: 1   MQSTPCACAIALAFTVCGDVFA---SGDEQTPLPAITVRGAKPSMTPP-SADSAALLNDQ 56

Query: 61  PGYASAAAGGVSALPVLNGFAADRLKIRLDGMEVTAACGNQMNAPMSYMPPAQVGVTRVM 120
           PGYA+AA GGVSALPVLNGFAADRLK RLDGMEVTAACGNQMNAPMSYMPPAQVG+TRV+
Sbjct: 57  PGYATAAGGGVSALPVLNGFAADRLKTRLDGMEVTAACGNQMNAPMSYMPPAQVGMTRVI 116

Query: 121 AGITPVSVGGDSIGGTIELASPAPQFAAQPGELLTKGGFSVSARSVNSEVSASVEGTVAS 180
           AGITPVSVGGDSIGGTIEL SPAPQFA+QPG+ LTKGGFS SARSVNSEVSASV  TVAS
Sbjct: 117 AGITPVSVGGDSIGGTIELNSPAPQFASQPGQWLTKGGFSASARSVNSEVSASVNATVAS 176

Query: 181 DSLSVHYVASQSRAESYVNGRGDKVLGSQFESNNHAVTVAARGDGQQLVFKAGQQYIPYQ 240
           D LSV YVASQSRAESYVNG GDKVL S ++SNNHA+T+AARG+GQQLV K GQQYIPYQ
Sbjct: 177 DQLSVAYVASQSRAESYVNGNGDKVLSSLYQSNNHALTLAARGEGQQLVLKVGQQYIPYQ 236

Query: 241 GFPNQYMDMTGNRSTFANLGYERRFDWGKLLGRVYWQRTEHEMGFFSAERTGTMPMQTQG 300
           GFPN+YMDMTGNRSTFANLGYERRFDWG+L G++YWQRTEHEMGFF  ER G MPMQTQG
Sbjct: 237 GFPNEYMDMTGNRSTFANLGYERRFDWGRLSGKLYWQRTEHEMGFFGTERRGNMPMQTQG 296

Query: 301 RDLGYTLRADIDLAPEGRSVLRVGNEYHSFHLDDDWPAVPGSMMMGPRTYVNINDGKRDR 360
           RDLGY LRADIDLA +  SVLRVG+EYHSFHLDD WP V GSMMM PRTYVNIN GKRDR
Sbjct: 297 RDLGYALRADIDLAADSSSVLRVGHEYHSFHLDDVWPPVAGSMMMSPRTYVNINGGKRDR 356

Query: 361 YALFAEWEGKLNERWSTIVGVRDELVKTDAGNVQSYGTNMMNMADLTAANAFNARGHAKT 420
           +ALFAEWE KL+ RWST++G+RDELVK+DAGNVQSYGTNMMN  DL AANAFNAR HAKT
Sbjct: 357 FALFAEWEHKLDARWSTLLGLRDELVKSDAGNVQSYGTNMMNQPDLNAANAFNARSHAKT 416

Query: 421 DNNIDLTALARFTPDAGQTWEVGYARKTRSPNLYERYTWGRGTMAMTMTNWFGDGNGYVG 480
           DNNIDLTALAR   DAG  +E GYARKTRSPNLYERYTWGRG MAM MTNWFGDGNGYVG
Sbjct: 417 DNNIDLTALARLEADAGSRYEFGYARKTRSPNLYERYTWGRGGMAMRMTNWFGDGNGYVG 476

Query: 481 NIDLKPEVAHTLSATADWHASDKEGNEP------RWFFKLTPYFSYVENYIDADVIGRFN 534
           +IDLKPEVAHTLS TADWH+ D EG E       RWFF+LTPYFSYVENYIDAD +GRFN
Sbjct: 477 DIDLKPEVAHTLSGTADWHSEDSEGGEGSEGSERRWFFRLTPYFSYVENYIDADPLGRFN 536

Query: 535 PYSVSTASGALLQFANHDARLYGINASWKWPLLRTAGMGDIAFTGKAGLTRGKRVDGGNL 594
           PY V+ ASGA LQFANHDARLYGINA+WKWPL R AG+GDIAFTGKAGLTRGKRVDGGNL
Sbjct: 537 PYRVAAASGAYLQFANHDARLYGINAAWKWPLWRAAGLGDIAFTGKAGLTRGKRVDGGNL 596

Query: 595 YHMMPFNVLAALEQQQGAWTNRAEVNYVARKTLVDSNRLEPVTASYTVFNLRSSYQFNQA 654
           YHMMP N+LAALEQ  GAW+NRAE+NYVARK+ VDSNRLEPVTASY+V NL+SSY+FNQ 
Sbjct: 597 YHMMPLNILAALEQTWGAWSNRAELNYVARKSRVDSNRLEPVTASYSVVNLKSSYRFNQH 656

Query: 655 ISVSAGISNLFNRNYADALGGVYLSGLAKTKSGSLQALPGYGRSLDVGVNVRF 707
           ISV+AG+SNLFNRNYA+ LGGVYL+GLA+ +SGSLQALPGYGRSLDVGVNV F
Sbjct: 657 ISVTAGVSNLFNRNYAEPLGGVYLAGLAQARSGSLQALPGYGRSLDVGVNVSF 709


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,257,225
Number of extensions: 99741
Number of successful extensions: 371
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 615
Effective length of database: 1,184,250
Effective search space: 728313750
Effective search space used: 728313750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)