BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0014.p
         (125 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310044|ref|YP_003774136.1| hypothetical protein Hsero_0709...   168   1e-43

>gi|300310044|ref|YP_003774136.1| hypothetical protein Hsero_0709
           [Herbaspirillum seropedicae SmR1]
          Length = 125

 Score =  168 bits (426), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/126 (92%), Positives = 119/126 (94%), Gaps = 2/126 (1%)

Query: 1   MASKKIASVLIATTLLASAAVVSTPAMAHDRGGNGVAIAAGIIGAVAIGSLIANSQPAPV 60
           MASKKIASVLIATTLLASAA VSTPAMAHDRGGNGVAIAAGIIGAVAIGSLIAN+  APV
Sbjct: 1   MASKKIASVLIATTLLASAAAVSTPAMAHDRGGNGVAIAAGIIGAVAIGSLIANANSAPV 60

Query: 61  YQAPPQQVYYEAPQPVYYQPPQQVVYEQPRY-YAPPPPRPVRYVERTEVRTYRYDDRPDY 119
           YQAPPQQVYYEAPQPVYYQPPQQVVYEQPRY   PPPPRPVRYVERTEVRTYRYD+RPDY
Sbjct: 61  YQAPPQQVYYEAPQPVYYQPPQQVVYEQPRYYAPPPPPRPVRYVERTEVRTYRYDERPDY 120

Query: 120 YSYYGR 125
           Y YYGR
Sbjct: 121 Y-YYGR 125


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 65,457
Number of extensions: 764
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,264,745
Effective search space: 63237250
Effective search space used: 63237250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)