BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0011.p
         (485 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl c...   811   0.0  
gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isome...    64   3e-11
gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isome...    60   6e-10

>gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl
           cis-trans isomerase [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/485 (90%), Positives = 456/485 (94%), Gaps = 3/485 (0%)

Query: 1   VTALLCMLGVISNAHAQFATTIIPVTPPETTGSAPSAPAKGSPKAAVKPAASKPAAPAAA 60
           VTALLCMLGVISNA AQFATTIIPVTPPET  SA  APA G P AA   A +K AAPA A
Sbjct: 15  VTALLCMLGVISNAQAQFATTIIPVTPPET--SAQPAPANGKPPAASPAAPAKAAAPAPA 72

Query: 61  PAAPAPAAASARNEPRPVDSILVVVNNEVITRQEVAERLASVEKRMAAQNVQLPPRQQLV 120
            A  A A + AR EPRPVDSI+VVVNNEVITRQEVA+RLASV KRM+AQNVQLPPR QLV
Sbjct: 73  KATAA-APSQARVEPRPVDSIMVVVNNEVITRQEVADRLASVVKRMSAQNVQLPPRDQLV 131

Query: 121 RQLVERMIVERAQAQMAKESGIVVDDAMLDRAMQRIAEQNKLSMPEFRSRLEAEGMNYAS 180
           RQLVERMIVERAQAQMAKE+GIVVDDAMLDRAMQRIA+QNKLSM +FR+RLEAEGMNYAS
Sbjct: 132 RQLVERMIVERAQAQMAKENGIVVDDAMLDRAMQRIADQNKLSMAQFRTRLEAEGMNYAS 191

Query: 181 FREEIRREILSQRLREREVDNKVVVTESEIDNYLAAEANAGGQRQELDIAQILIRVPENA 240
           FREEIRREILSQRLREREVDNKVVVTESE+DNYLAAEANAGGQRQELDIAQILIRVPENA
Sbjct: 192 FREEIRREILSQRLREREVDNKVVVTESEVDNYLAAEANAGGQRQELDIAQILIRVPENA 251

Query: 241 SPEQLAARRERAEDVLRQLKTGADFAKTAAAYSDSSDALSGGDLGWRPADRLPQLFLDGV 300
           +P+QLA RRERAEDVLRQLKTGADFAKTAAAYSD+SDALSGGDLGWRPADRLPQLFLDGV
Sbjct: 252 TPDQLAQRRERAEDVLRQLKTGADFAKTAAAYSDASDALSGGDLGWRPADRLPQLFLDGV 311

Query: 301 AKLQDGQVSGLLKSGNGFHILKLVGRRAAGGTQAAAPAVQQTHVRHILIKVNQVVTAAEA 360
           AKLQDGQVSGLLKSGNGFHILKLVGRR A G QAAAPAVQQTHVRHILIKVNQVVTAAEA
Sbjct: 312 AKLQDGQVSGLLKSGNGFHILKLVGRRTADGAQAAAPAVQQTHVRHILIKVNQVVTAAEA 371

Query: 361 KRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWIYPGDTVPEFERAMDQLKPGE 420
           KRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGW+YPGDTVPEFERAMDQLKPGE
Sbjct: 372 KRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWVYPGDTVPEFERAMDQLKPGE 431

Query: 421 VSQPIETPFGYHLIQVVERKTDDASKERTRQAARQAIRERKIEEATEDWMRQIRDRAYVE 480
           VSQPIETPFGYHLIQVVERKTDDASKER RQAARQAIRERKI+EATEDWMRQIRDRAYVE
Sbjct: 432 VSQPIETPFGYHLIQVVERKTDDASKERARQAARQAIRERKIDEATEDWMRQIRDRAYVE 491

Query: 481 YRNDD 485
           YRND+
Sbjct: 492 YRNDE 496


>gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 16/143 (11%)

Query: 340 QQTHVRHILIKVNQVVTAAEAKRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGW 399
           ++ H RHIL+   +   A  AK K              FE+LAK   +  SA+ GGDL W
Sbjct: 130 KEYHARHILVDKKEDAEAIIAKLK----------AGTKFEDLAKQSKDTGSAANGGDLDW 179

Query: 400 IYPGDTVPEFERAMDQLKPGEVS-QPIETPFGYHLIQVVE-RKTDDASKERTRQAARQAI 457
             P   V  F  AM  LK GEV+  P++T FG+H+I++ + R     + +  +    +A+
Sbjct: 180 ATPASFVKPFSDAMVALKKGEVTPTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEAL 239

Query: 458 RERKIEEATEDWMRQIRDRAYVE 480
           +++K++   E    Q+R +A V+
Sbjct: 240 QQKKLQAYQE----QLRAKAKVQ 258


>gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans
           isomerase D [Herbaspirillum seropedicae SmR1]
          Length = 639

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 4/102 (3%)

Query: 340 QQTHVRHILIKVNQVVTAAEAKRKLTE---LKERLDHGSATFEELAKLYSND-LSASKGG 395
           +Q    HILI V +  +AA+     ++   L  +L      F +LAK  S D  SA  GG
Sbjct: 266 EQRRASHILIAVKKDASAADQAAAKSKAEGLVAQLRKNPGEFAKLAKANSQDPGSAENGG 325

Query: 396 DLGWIYPGDTVPEFERAMDQLKPGEVSQPIETPFGYHLIQVV 437
           DLG+   G  V  FE A   LK GE+S P+++ FGYH+I+V 
Sbjct: 326 DLGYFGKGAMVKPFEDAAFSLKQGEISDPVQSDFGYHIIEVT 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,073,547
Number of extensions: 36602
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 4
Length of query: 485
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 396
Effective length of database: 1,198,455
Effective search space: 474588180
Effective search space used: 474588180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)