BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0004.p
         (439 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310034|ref|YP_003774126.1| transmembrane NAD(P) transhydro...   869   0.0  

>gi|300310034|ref|YP_003774126.1| transmembrane NAD(P)
           transhydrogenase subunit beta [Herbaspirillum
           seropedicae SmR1]
          Length = 479

 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/439 (99%), Positives = 438/439 (99%)

Query: 1   MVIAVLTTLALIVKIKGEGTNPSGDIGYLLVAGGVIVGGGIGAYLARSVEMTKMPELVAA 60
           MVIAVLTTLALIVKIKGEG NPSGDIGYLLVAGGVIVGGGIGAYLARSVEMTKMPELVAA
Sbjct: 41  MVIAVLTTLALIVKIKGEGGNPSGDIGYLLVAGGVIVGGGIGAYLARSVEMTKMPELVAA 100

Query: 61  MHSLIGLAAVCIAVAAVAEPWALGISAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGK 120
           MHSLIGLAAVCIAVAAVAEPWALGISAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGK
Sbjct: 101 MHSLIGLAAVCIAVAAVAEPWALGISAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGK 160

Query: 121 LSGKYKFRLFQGAPVNFAGQHFLNLLLAVAMIGFGIIFVLTQNWLPFIIMAAIAFALGVL 180
           LSGKYKFRLFQGAPVNFAGQHFLNLLLAVAMIGFGIIFVLTQNWLPFIIMAAIAFALGVL
Sbjct: 161 LSGKYKFRLFQGAPVNFAGQHFLNLLLAVAMIGFGIIFVLTQNWLPFIIMAAIAFALGVL 220

Query: 181 IIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMN 240
           IIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMN
Sbjct: 221 IIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMN 280

Query: 241 RSFFNVILGGFGGEAAAAGGGAQQQRNVKSGSADDAAFLMGNAETVIIVPGYGLAVARAQ 300
           RSFFNVILGGFGG+AAAAGGGAQQQRNVKSGSADDAAFLMGNAETVIIVPGYGLAVARAQ
Sbjct: 281 RSFFNVILGGFGGDAAAAGGGAQQQRNVKSGSADDAAFLMGNAETVIIVPGYGLAVARAQ 340

Query: 301 HALKELTEKLTHNGVTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQAD 360
           HALKELTEKLTHNGVTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQAD
Sbjct: 341 HALKELTEKLTHNGVTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQAD 400

Query: 361 VVLVLGANDVVNPAAKDPKSPIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKT 420
           VVLVLGANDVVNPAAKDPKSPIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKT
Sbjct: 401 VVLVLGANDVVNPAAKDPKSPIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKT 460

Query: 421 MMVFGDAKKVIEDMVKAVD 439
           MMVFGDAKKVIEDMVKAVD
Sbjct: 461 MMVFGDAKKVIEDMVKAVD 479


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,200,605
Number of extensions: 48131
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 351
Effective length of database: 1,203,190
Effective search space: 422319690
Effective search space used: 422319690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)