BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0109.p (494 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313323|ref|YP_003777415.1| hypothetical protein Hsero_4036... 403 e-113 gi|300310077|ref|YP_003774169.1| hypothetical protein Hsero_0742... 401 e-113 >gi|300313323|ref|YP_003777415.1| hypothetical protein Hsero_4036 [Herbaspirillum seropedicae SmR1] Length = 497 Score = 403 bits (1036), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/475 (41%), Positives = 307/475 (64%), Gaps = 7/475 (1%) Query: 20 SLLDQLIESARIKPGDDAYSITKQGIQAFISQLLEPQNAVERITQATVDSMIADLDKKLC 79 +LLD ++E +++ + K I +SQ++E V AT+D+ IA+LD+ + Sbjct: 21 TLLDDIVEQSKVAKSSSEHDRAKDLISELVSQVMEGTVVVSENLSATLDARIAELDRLIS 80 Query: 80 AQVDAILHHENFQKLESAWRSLKFLVDRTNFRENVKIQIMSVSKDKLLEDFEDSADITKS 139 +QV AI+H FQKLE +W L +LV T EN KI+I++ +K +L++DF + + +S Sbjct: 81 SQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKILNATKKELVKDFNSALEFDQS 140 Query: 140 GLYKNMYTAEYGQFGGQPFGAIVANYEFGPGGQDIKLLQYAASVSAMSHAPFIAATAPQF 199 ++K +Y E+G FGG PFGA++ ++E +D+ ++ + ++A SHAPFI A +P+ Sbjct: 141 AMFKKVYEEEFGTFGGAPFGALLGDFEITRQPEDMYFIEQMSRIAAASHAPFITAASPEL 200 Query: 200 FGVDSYDQLPNLKDLSSIFEGPQFVKWNAFRESEDARYIGLTLPHFLLRVPYG-TDTVPA 258 FG++S+ +L +DLS +F+ ++ KW +FRESED+RY+GLTLP FL R+P+ D Sbjct: 201 FGLESFSELGKPRDLSKVFDTVEYAKWKSFRESEDSRYVGLTLPRFLGRLPFNPKDGTTV 260 Query: 259 KKFNYTEDVSGGN-KQFLWGNAAFAFATRLTASFADYRWCANVIGPQGGGTVGDLPVYTY 317 + FN+ EDV G + ++LW NAA+AF ++LT +F D+ WCA + G +GGG V DLP +T+ Sbjct: 261 EGFNFVEDVDGTDHSKYLWCNAAYAFGSKLTKAFEDFGWCAAIRGVEGGGLVEDLPTHTF 320 Query: 318 ES-MGELQNKIPTEVLISERREFELAEQGFMALTMRKNSDNAAFFSANSAQKPKFFGNTK 376 ++ GE+ K PTE+ I++RRE EL++ GF++L KN+D AAFF A SAQKPK + + Sbjct: 321 KTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTDYAAFFGAQSAQKPKKYNSDA 380 Query: 377 EGKEAELNYKLSTQLPYMFVVSRLAHYIKVIQRENIGTWKERGDLESELNNWIRQYVADM 436 A N LS+QL Y+F VSR+AHY+K + R+ IG++ ++E LN WI QYV Sbjct: 381 ----ANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASNVEDFLNRWIAQYVLLD 436 Query: 437 DNPAEGVRSRRPLRQAEIVVADVEGDPGWYKVDLKVRPHFKYMGASFTLSLVGKL 491 DN + +++ PLR+A + V++V G PG Y+ +RPHF+ S +L LV +L Sbjct: 437 DNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDELSVSLRLVAEL 491 >gi|300310077|ref|YP_003774169.1| hypothetical protein Hsero_0742 [Herbaspirillum seropedicae SmR1] Length = 495 Score = 401 bits (1031), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/474 (41%), Positives = 305/474 (64%), Gaps = 7/474 (1%) Query: 21 LLDQLIESARIKPGDDAYSITKQGIQAFISQLLEPQNAVERITQATVDSMIADLDKKLCA 80 LLD ++E +++ + K I ++Q++E V AT+D+ IA+LDK + + Sbjct: 20 LLDDIVEQSKVAKSASEHDRAKDLITELVNQVMEGTVVVSSNLSATLDARIAELDKLISS 79 Query: 81 QVDAILHHENFQKLESAWRSLKFLVDRTNFRENVKIQIMSVSKDKLLEDFEDSADITKSG 140 QV AI+H FQKLE +W L +LV T EN KI+I++ +K +L++DF + + +S Sbjct: 80 QVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKILNATKKELVKDFNSALEFDQSA 139 Query: 141 LYKNMYTAEYGQFGGQPFGAIVANYEFGPGGQDIKLLQYAASVSAMSHAPFIAATAPQFF 200 ++K +Y E+G FGG PFG ++ ++E +D+ ++ + ++A SHAPF+ A +P+ F Sbjct: 140 MFKKVYEEEFGTFGGAPFGVLLGDFEITRQPEDMYFIEQMSRIAAASHAPFVTAASPELF 199 Query: 201 GVDSYDQLPNLKDLSSIFEGPQFVKWNAFRESEDARYIGLTLPHFLLRVPYG-TDTVPAK 259 G++SY L +DLS +F+ ++ KW +FRESED+RY+GLTLP FL R+P+ D + Sbjct: 200 GLESYADLGKPRDLSKVFDTVEYAKWKSFRESEDSRYVGLTLPRFLGRLPFNPKDGTTVE 259 Query: 260 KFNYTEDVSGGN-KQFLWGNAAFAFATRLTASFADYRWCANVIGPQGGGTVGDLPVYTYE 318 FN+ EDV G + ++LW NAA+AF T+LT +F D+ WCA + G +GGG V DLP +T++ Sbjct: 260 GFNFVEDVDGSDHSKYLWCNAAYAFGTKLTKAFEDFGWCAAIRGVEGGGLVEDLPTHTFK 319 Query: 319 S-MGELQNKIPTEVLISERREFELAEQGFMALTMRKNSDNAAFFSANSAQKPKFFGNTKE 377 + GE+ K PTE+ I++RRE EL++ GF++L KN+D AAFF A SAQKPK + NT Sbjct: 320 TDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTDYAAFFGAQSAQKPKKY-NT-- 376 Query: 378 GKEAELNYKLSTQLPYMFVVSRLAHYIKVIQRENIGTWKERGDLESELNNWIRQYVADMD 437 A N LS+QL Y+F VSR+AHY+K + R+ IG++ ++E LN WI QYV D Sbjct: 377 -DSANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASNVEDFLNRWISQYVLLDD 435 Query: 438 NPAEGVRSRRPLRQAEIVVADVEGDPGWYKVDLKVRPHFKYMGASFTLSLVGKL 491 N + +++ PLR+A + V++V G PG Y+ +RPHF+ S +L LV +L Sbjct: 436 NATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDELSVSLRLVAEL 489 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,433,701 Number of extensions: 60124 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 2 Length of query: 494 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 405 Effective length of database: 1,198,455 Effective search space: 485374275 Effective search space used: 485374275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)