BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0108.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310076|ref|YP_003774168.1| hypothetical protein Hsero_0741...    65   3e-12
gi|300313324|ref|YP_003777416.1| hypothetical protein Hsero_4037...    60   7e-11

>gi|300310076|ref|YP_003774168.1| hypothetical protein Hsero_0741
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score = 65.1 bits (157), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 8/127 (6%)

Query: 11  RVNIVYRPATGDAKSEVELPLKLLVVGDYTLRNDDTP---IEEMKPVNIDKDNFNDVLKA 67
           RV + Y    GDA  + EL     VVGD+   N + P   +++ K VN+D DNF++V+KA
Sbjct: 18  RVQMTYDVEIGDAIEKKELAFVTGVVGDFG-GNSEVPQPRLKDRKFVNVDPDNFDEVMKA 76

Query: 68  QKLSLDLTVPNKLDDKADPDAVLAMNMSFEHINDFTPDAIVDKVPELRQMIALRDALKAL 127
            +      VPN+L DK       A+ + F  + DF P+A+V +V  LR+++  R  L  L
Sbjct: 77  IEPRAVYRVPNELSDKG---GEFAVELKFRSMEDFRPEAVVQQVEPLRKLLEARTKLADL 133

Query: 128 KGPL-GN 133
           +  + GN
Sbjct: 134 RNKIAGN 140


>gi|300313324|ref|YP_003777416.1| hypothetical protein Hsero_4037
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score = 60.5 bits (145), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 8/127 (6%)

Query: 11  RVNIVYRPATGDAKSEVELPLKLLVVGDYTLRNDDTP---IEEMKPVNIDKDNFNDVLKA 67
           RV + Y    GDA  + EL     V+GD+   N + P   +++ K +N+D DNF++V+K 
Sbjct: 18  RVQMTYDVEIGDAIEKKELAFVTGVMGDFG-GNSELPQPRLKDRKFINVDPDNFDEVMKG 76

Query: 68  QKLSLDLTVPNKLDDKADPDAVLAMNMSFEHINDFTPDAIVDKVPELRQMIALRDALKAL 127
            +      VPN+L DK       A+ + F  + DF P+++V +V  LR+++  R  L  L
Sbjct: 77  IEPRAVYRVPNELSDKG---GEFAVELKFRSMEDFRPESVVQQVEPLRKLLEARTRLADL 133

Query: 128 KGPL-GN 133
           +  + GN
Sbjct: 134 RNKIAGN 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.136    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 502,868
Number of extensions: 19571
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)