BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0094.p (269 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirill... 438 e-124 gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirill... 103 1e-23 >gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 438 bits (1126), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/268 (80%), Positives = 231/268 (86%) Query: 1 MAVDHYENFPVASLLLPARLRPAVTAIYAFARSADDIADEGDARPEERLAALHAYDAQLD 60 MAVDHYENFPVASLLLPARLRPAVT IYAFARSADDIADEGDA PEERLA LHAY+AQLD Sbjct: 1 MAVDHYENFPVASLLLPARLRPAVTDIYAFARSADDIADEGDAAPEERLAGLHAYEAQLD 60 Query: 61 LIEQQLPCTHPIFKRLQQIIAGHALPLQPFRDLLSAFRQDVVTTRYPHYSDLLDYCRRSA 120 LI +Q PC P+F+RL+ IA H LPLQP RDLLSAFRQDVVTTRY HY+DLLDYCRRSA Sbjct: 61 LIARQQPCATPMFERLRHTIARHELPLQPLRDLLSAFRQDVVTTRYEHYTDLLDYCRRSA 120 Query: 121 NPVGTLMLHLYGEANEENLQDSAAICSALQLINFWQDVAIDWQKTRIYLPLEDLERFGIN 180 NPVGTLMLHLYG A+EENL+DS AICSALQLINFWQD+AIDWQK RIYLPLEDL RFG+ Sbjct: 121 NPVGTLMLHLYGAASEENLRDSDAICSALQLINFWQDIAIDWQKQRIYLPLEDLARFGVT 180 Query: 181 ENDIAQACSDQRWQQLMQFEVTRARELMLSGAPLVRRLPGRIGLELRMVVQGGLRILERI 240 DIA D RWQQLM+FEV RAR LML+GAPL +RLPGRIG ELR+VVQGGLRIL RI Sbjct: 181 PEDIAAGRCDGRWQQLMRFEVERARALMLAGAPLAKRLPGRIGWELRLVVQGGLRILARI 240 Query: 241 EAVQGDVFRQRPKLGKPDWLIIGWRGLT 268 E VQGDVF RPKLGK DWL +G R LT Sbjct: 241 ERVQGDVFGHRPKLGKADWLAVGGRALT 268 >gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirillum seropedicae SmR1] Length = 277 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 2/199 (1%) Query: 7 ENFPVASLLLPARLRPAVTAIYAFARSADDIADEGDARPEERLAALHAYDAQLDLIEQQL 66 +F + L LP + R A+TA+YAF R DD DE + R + ++E Q Sbjct: 16 SSFYYSFLFLPPQRRLAITALYAFCREVDDTVDEIEDTMVARTKLMWWRKEIAAMLEGQ- 74 Query: 67 PCTHPIFKRLQQIIAGHALPLQPFRDLLSAFRQDVVTTRYPHYSDLLDYCRRSANPVGTL 126 THP+ K L +A + L + + ++ D+ +RY Y L YC A VG L Sbjct: 75 -PTHPVTKALHPHVATYGLKGEHLQAIIDGMEMDLDQSRYLDYPGLQRYCWHVAGVVGVL 133 Query: 127 MLHLYGEANEENLQDSAAICSALQLINFWQDVAIDWQKTRIYLPLEDLERFGINENDIAQ 186 ++G L + + A QL N +DV D +K RIYLP+ +L++F + DI Sbjct: 134 SASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNELQQFNVTAADILN 193 Query: 187 ACSDQRWQQLMQFEVTRAR 205 A +R++ LM+F+V RA+ Sbjct: 194 ARHSERFEALMKFQVERAQ 212 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 834,621 Number of extensions: 33057 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 2 Length of query: 269 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 185 Effective length of database: 1,222,130 Effective search space: 226094050 Effective search space used: 226094050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)