BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0092.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirill...   562   e-161
gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirill...   104   7e-24

>gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 277

 Score =  562 bits (1448), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 269/275 (97%), Positives = 272/275 (98%)

Query: 1   MSPDEYCQQKAAASGSSFYYSFLFLPPQRRLAITALYAFCREVDDTVDEIEDAMVARTKL 60
           MSPDEYCQQKAAASGSSFYYSFLFLPPQRRLAITALYAFCREVDDTVDEIED MVARTKL
Sbjct: 1   MSPDEYCQQKAAASGSSFYYSFLFLPPQRRLAITALYAFCREVDDTVDEIEDTMVARTKL 60

Query: 61  MWWRKEIAAMLEGQPTHPVTKALHPHVATYQLKGEHLQAIIDGMEMDLDQTRYLDYPGLQ 120
           MWWRKEIAAMLEGQPTHPVTKALHPHVATY LKGEHLQAIIDGMEMDLDQ+RYLDYPGLQ
Sbjct: 61  MWWRKEIAAMLEGQPTHPVTKALHPHVATYGLKGEHLQAIIDGMEMDLDQSRYLDYPGLQ 120

Query: 121 RYCWHVAGVVGVLSASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNE 180
           RYCWHVAGVVGVLSASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNE
Sbjct: 121 RYCWHVAGVVGVLSASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNE 180

Query: 181 LQQFNVTAADILNARHSERFEALMKFQVERAQAVYDEAFALLPKEDRRAQRPGLMMAAIY 240
           LQQFNVTAADILNARHSERFEALMKFQVERAQAVYDEAFALLP+EDRRAQRPGLMMAAIY
Sbjct: 181 LQQFNVTAADILNARHSERFEALMKFQVERAQAVYDEAFALLPREDRRAQRPGLMMAAIY 240

Query: 241 RTLLDEITRDGYHVLNQRISLTPIRKLWLAWKTYV 275
           RTLLDEI RDGYHVL+QRISLTPIRKLWLAWKTYV
Sbjct: 241 RTLLDEIARDGYHVLHQRISLTPIRKLWLAWKTYV 275


>gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 269

 Score =  104 bits (260), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 2/200 (1%)

Query: 17  SFYYSFLFLPPQRRLAITALYAFCREVDDTVDEIEDAMVAR-TKLMWWRKEIAAMLEGQP 75
           +F  + L LP + R A+T +YAF R  DD  DE + A   R   L  +  ++  +   QP
Sbjct: 8   NFPVASLLLPARLRPAVTDIYAFARSADDIADEGDAAPEERLAGLHAYEAQLDLIARQQP 67

Query: 76  T-HPVTKALHPHVATYQLKGEHLQAIIDGMEMDLDQTRYLDYPGLQRYCWHVAGVVGVLS 134
              P+ + L   +A ++L  + L+ ++     D+  TRY  Y  L  YC   A  VG L 
Sbjct: 68  CATPMFERLRHTIARHELPLQPLRDLLSAFRQDVVTTRYEHYTDLLDYCRRSANPVGTLM 127

Query: 135 ASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNELQQFNVTAADILNA 194
             ++G      L  ++ +  A QL N  +D+  D +K RIYLP+ +L +F VT  DI   
Sbjct: 128 LHLYGAASEENLRDSDAICSALQLINFWQDIAIDWQKQRIYLPLEDLARFGVTPEDIAAG 187

Query: 195 RHSERFEALMKFQVERAQAV 214
           R   R++ LM+F+VERA+A+
Sbjct: 188 RCDGRWQQLMRFEVERARAL 207


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 823,539
Number of extensions: 32859
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)