BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0091.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311905|ref|YP_003775997.1| squalene/phytoene dehydrogenase...   642   0.0  

>gi|300311905|ref|YP_003775997.1| squalene/phytoene dehydrogenase;
           carotene 7,8-desaturase [Herbaspirillum seropedicae
           SmR1]
          Length = 443

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/371 (85%), Positives = 341/371 (91%)

Query: 1   MKQIGVDPACALLRLPLQMRYPLATGAEGMDFVAPRLPAPWHVAVALLRAKGLQREDKMA 60
           MKQ+GVD A ALLRLPLQMRYPL   AEGMDFVAPRLPAPWHVAVALLRAKGL REDKMA
Sbjct: 72  MKQVGVDSASALLRLPLQMRYPLQGNAEGMDFVAPRLPAPWHVAVALLRAKGLTREDKMA 131

Query: 61  LARFSTTARWMGWQLHQDCSVAELLERYEQTARLIRLMWRPLCIAALNTAPERASAQVFL 120
           LARFSTTARWMGWQLHQDCSV+ELL R++QT R+IRLMWRPLCIAALNT PERASAQVFL
Sbjct: 132 LARFSTTARWMGWQLHQDCSVSELLARFDQTPRVIRLMWRPLCIAALNTPPERASAQVFL 191

Query: 121 NVLRDSLGARRAASDMLIPRVDLSALLPDAAAAYLGKRGGLVQTGVAVARLMPGNDEGNW 180
           NVLRDSLGARRAASDMLIPR+DLSALLPDAAAAYL KRGGLVQ GVAVA L+PG  +  W
Sbjct: 192 NVLRDSLGARRAASDMLIPRLDLSALLPDAAAAYLAKRGGLVQAGVAVAHLLPGQQDTTW 251

Query: 181 RLEDRAGESLGEFAGVVLATGPDAAAQLLEGLHDTALLQALEHEPITTCYLQYPSGVRLP 240
           RL+DRAGESLGEFAGVVLATGP+AAAQLL+GLHDT+ L++L+HEPITTCYL YP G RLP
Sbjct: 252 RLQDRAGESLGEFAGVVLATGPEAAAQLLQGLHDTSRLESLQHEPITTCYLHYPQGARLP 311

Query: 241 APFLALADDPQRQAWGQFVFDRGQLGGDAGLLAVVVSAAGQAIADGHAALSAGITRQLAN 300
           APFLALADDPQRQAWGQFVFDRGQLGG+AGLLAVVVSAAGQAIADG AAL+ G+TRQLA+
Sbjct: 312 APFLALADDPQRQAWGQFVFDRGQLGGEAGLLAVVVSAAGQAIADGQAALTEGVTRQLAS 371

Query: 301 DFGDAALATPGWSRIITEKRATFACTPGLQRPDNTGMPAGLALAGDYVAGDYPATLEGAV 360
           DF D  LATPGWSR+ITEKRATFACTPGL RPD+  +PAGLALAGDYVAGDYPATLEGAV
Sbjct: 372 DFADPTLATPGWSRVITEKRATFACTPGLVRPDSADLPAGLALAGDYVAGDYPATLEGAV 431

Query: 361 RSGMAAARLLA 371
           RS MAAAR +A
Sbjct: 432 RSAMAAARRVA 442


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,149,499
Number of extensions: 47695
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)