BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0087.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspiril...   516   e-148
gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspiril...   107   1e-24

>gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 259

 Score =  516 bits (1328), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/259 (95%), Positives = 255/259 (98%)

Query: 1   MYIDSHCHINFPDLAARLPEIFGKMADNQVSHALCVSVDLPDFPQVLALAEQYPNVYASV 60
           MYIDSHCHINFPDLAARLPEIFGKMA+NQVSHALCVSVDLPDFPQVLALAEQYP+VYASV
Sbjct: 1   MYIDSHCHINFPDLAARLPEIFGKMAENQVSHALCVSVDLPDFPQVLALAEQYPHVYASV 60

Query: 61  GVHPDYEDTPEPTLDELIRLADHPRIVAIGETGLDYYRLQGDLEWQRERFRTHIRASRAT 120
           GVHPDYEDTPEP++DEL+RLADHPRIVAIGETGLDYYRLQGDLEWQRERFRTHIRASRAT
Sbjct: 61  GVHPDYEDTPEPSVDELVRLADHPRIVAIGETGLDYYRLQGDLEWQRERFRTHIRASRAT 120

Query: 121 GKPLIIHTRSASEDTIRILQEEGASPQAGGVAGVMHCFTESQAVADAAIELGFYISFSGI 180
           GKPLIIHTR+ASEDTIRIL+EEGASPQAGG AGVMHCFTESQ VADAAIELGFYISFSGI
Sbjct: 121 GKPLIIHTRAASEDTIRILREEGASPQAGGAAGVMHCFTESQEVADAAIELGFYISFSGI 180

Query: 181 VTFKSAKDLQQVARTIPLERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEFIADLRGISA 240
           VTFKSAKDLQQVAR IPLERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEFIADLRG SA
Sbjct: 181 VTFKSAKDLQQVARAIPLERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEFIADLRGTSA 240

Query: 241 AEVARQTSDNFFKLFGIKP 259
           AEVARQTS+NFFKLFGIKP
Sbjct: 241 AEVARQTSENFFKLFGIKP 259


>gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 268

 Score =  107 bits (266), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 15/252 (5%)

Query: 1   MYIDSHCHINFPDLAARLPEIFGKMADNQVSHALCVSVDLPDFPQVLALAEQYPNVYASV 60
           M++D+HCH++  +   R   +  + A   V   +  ++   +F +V  LA +  N   ++
Sbjct: 1   MWVDTHCHLDAGEFGERSAILADEAAQAGVRVIVIPAIARANFARVGQLAREVGNAVYAL 60

Query: 61  GVHPDYEDTPEPTLDELIRLA-----DHPRIVAIGETGLDYYRLQGDLEWQRER----FR 111
           G+HP Y  + + +   L+R A     D P  V IGE GLD++         RE+    F 
Sbjct: 61  GIHPLYVPSSQESDLALLREAIAAALDDPLFVGIGEIGLDFFVPALKEPPLREKQEFFFA 120

Query: 112 THIRASRATGKPLIIHTRSASEDTIRILQEEGASPQAGGVAGVMHCFTESQAVADAAIEL 171
             ++ +R    P+++H R + +  ++ L+            G+ H F  S   A   +EL
Sbjct: 121 EQLKLARDFALPVLLHVRRSQDIILKHLRRIRVP------GGIAHAFNGSDQQARTFVEL 174

Query: 172 GFYISFSGIVTFKSAKDLQQVARTIPLERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEF 231
           G ++ F G +TF  A  ++++A  +PL  +++ETD+P +AP     + N P  +  +G+ 
Sbjct: 175 GLHLGFGGAMTFPRALQIRRLAAELPLSSIVLETDAPDIAPAWRHPEINTPDQIPRIGQV 234

Query: 232 IADLRGISAAEV 243
           +A+LRG+   EV
Sbjct: 235 LAELRGLPQQEV 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 836,978
Number of extensions: 36015
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)