BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0085.p (442 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311910|ref|YP_003776002.1| transmembrane sensor histidine ... 606 e-174 gi|300311774|ref|YP_003775866.1| two component sensor histidine ... 167 1e-42 gi|300313027|ref|YP_003777119.1| two component transmembrane sen... 60 2e-10 >gi|300311910|ref|YP_003776002.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 443 Score = 606 bits (1562), Expect = e-174, Method: Compositional matrix adjust. Identities = 347/423 (82%), Positives = 384/423 (90%), Gaps = 6/423 (1%) Query: 19 QHLLLSRLFWLRWAMVAGELLVLAGAHAWLHIALPLPALLALIGLQALINAATWLRMRWA 78 QH+LLSRLFWLRWAMVAGELLVLAGAH WLHIALP+P LLALIGLQAL+N ATWLR+RW Sbjct: 17 QHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRWT 76 Query: 79 RPAEQAELFMQLLLDVAVLTALLYFSGGSTNPFVSFYLPALAAGAATLAWPYALLLALCA 138 RPAEQ ELF+QLLLD+AVLTALLYFSGGSTNPFVSFYLPALAAGAA+LAWPYALLLALCA Sbjct: 77 RPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALCA 136 Query: 139 LGCYSGLVYFYQPLHIHDHGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRLRDGQLA 198 LG YSGLVY Y+PLHIHD GQAMAYHLAGMWINFSISALLITWFVSRIAAAVR R+ +LA Sbjct: 137 LGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETELA 196 Query: 199 QARERQLQSHRIVALGTQAAGAAHALNTPLSTVAVIAGEMRRDMASNPALAAYEEDVRVV 258 +ARERQLQS RI+ALGTQAAGAAHALNTPLSTVAVIAGE+RRDMA+ PALAAY+E++RVV Sbjct: 197 RARERQLQSQRILALGTQAAGAAHALNTPLSTVAVIAGELRRDMATQPALAAYDEELRVV 256 Query: 259 EEQIAVCKAALENMRLDADAQLRNEDSAPITPWLTSLLEGWRLRHPAVLLAAEVHQPGWR 318 EEQIAVCKAALE+MR DADAQ RNEDSAPITPWLT+LLEGWRLRHPAVLL+AEVHQPGW Sbjct: 257 EEQIAVCKAALESMRQDADAQTRNEDSAPITPWLTTLLEGWRLRHPAVLLSAEVHQPGWV 316 Query: 319 ASQLQDLSQILLTLLDNAAHAVRGLGHQGEIRIRLAAAEAGERGSAASGKPGRNMAIIEV 378 A++L+DLSQILLTLLDNAAHAVR G +G + IR+ AA+ +G+P + AIIE+ Sbjct: 317 AARLEDLSQILLTLLDNAAHAVRERGSEGRVSIRMRAAD------EPAGRPAQKAAIIEI 370 Query: 379 SDNGAGISPELLQRLGHGPVASSSGGSGIGLMLATASATHLGGKLKLRSSPGQGTVAQLR 438 +DNG+GI+PELLQRLG PVASSSGGSGIGLMLA ASA HLGGKL+L S+PGQGT A+LR Sbjct: 371 ADNGSGIAPELLQRLGRAPVASSSGGSGIGLMLAFASAAHLGGKLRLYSTPGQGTCAELR 430 Query: 439 FPL 441 PL Sbjct: 431 LPL 433 >gi|300311774|ref|YP_003775866.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 460 Score = 167 bits (424), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 210/431 (48%), Gaps = 33/431 (7%) Query: 19 QHLLLSRLFWLRWAMVAGELLVLAGAHAWLHIALPLPALLALIGLQALINAATWLRMRWA 78 Q++LL L LRW V G++ +A + LPLP +L ++ N A+ LR Sbjct: 31 QNMLL--LIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCLVAFNIASHLRWHER 88 Query: 79 RPAEQAELFMQLLLDVAVLTALLYFSGGSTNPFVSFYLPALAAGAATLA-WPYALLLALC 137 R A AELF+ LL+DVAVLT LY SGG TNPF YL + A L W ++ + Sbjct: 89 RIATNAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAIVGVT 148 Query: 138 ALGCYSGLVYFYQPLHI-HDHGQA-MAYHLAGMWINFSISALLITWFVSRIAAAVRLRDG 195 L C +GL F +PL + DH ++ ++ G I F ++A L+ +F++RI++ +R D Sbjct: 149 ML-CLAGLALFSEPLALPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRAGDA 207 Query: 196 QLAQARERQLQSHRIVALGTQAAGAAHALNTPLSTVAVIAGEMRRDMASNPALAAYEEDV 255 LA R+R + IV +G A+GAAH L TPL+TV+VI G+ +R M +D+ Sbjct: 208 LLADLRQRAAEEDHIVRMGLLASGAAHELGTPLATVSVILGDWKR-MPEISQRQDMLDDI 266 Query: 256 RVVEEQIAVCKAALENMRLDADAQLRNEDSAPIT--PWLTSLLEGWRLRHP-AVLLAAEV 312 +E Q+ CK+ + + L A Q R E S T +L S+ E WR P AV + Sbjct: 267 AEMEAQLQRCKSIVSGVLLSA-GQARGESSIKTTLNTFLDSVAEDWRKSRPVAVFDYQNL 325 Query: 313 HQPGWRASQLQDLSQILLTLLDNAAHAVRGLGHQGEIRIRLAAAEAGERGSAASGKPGRN 372 + + Q+L +LDNA E+ + E G Sbjct: 326 IGQDLPVAFDSAIKQMLGNVLDNAF----------EVSPHWLSLEVRREG---------G 366 Query: 373 MAIIEVSDNGAGISPELLQRLGHGPVASSSG--GSGIGLMLATASATHLGGKLKLRSSPG 430 + ++EVSD G G ++ ++G P S+ G G G+GL A LGG++ + PG Sbjct: 367 LLLMEVSDQGPGFPEWMINQIGK-PYQSTKGKPGRGLGLFFVVNVARKLGGRVWASNLPG 425 Query: 431 QGTVAQLRFPL 441 G L PL Sbjct: 426 AGARVTLELPL 436 >gi|300313027|ref|YP_003777119.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 454 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 118/291 (40%), Gaps = 70/291 (24%) Query: 196 QLAQARERQLQSHRIVALGTQAAGAAHALNTPLSTV------------------------ 231 QL A+ + +QS ++ ++G AAG AH +N P+ V Sbjct: 170 QLKMAQAQLMQSEKLASIGQLAAGVAHEINNPIGFVSANLNTLGNYVATLLEGIQLHQCL 229 Query: 232 ------AVIAGEMRRDMASNPALAAYEEDVRVVEEQIAVCKAALENMRLDADAQLRNEDS 285 A +A E R + LA EDV E +A L+ +R + L++ Sbjct: 230 QGGALPAAMAQEQLRSFEARADLAFLSEDVT---ELLAESNEGLQRVR-NIVQSLKDFSR 285 Query: 286 APITPW-LTSLLEGW---------RLRHPAVLLAAEVHQPGWRASQLQDLSQILLTLLDN 335 + W +T L G L++ ++ P + +L+Q+ + LL N Sbjct: 286 IGESNWQMTDLHRGLDSTLNIANNELKYKVSIVKQYGELPLVKC-LASELNQVFMNLLVN 344 Query: 336 AAHAVRGLGHQGEIRIRLAAAEAGERGSAASGKPGRNMAIIEVSDNGAGISPELLQRLGH 395 AA A+ G + + A AG++ S + +SD G GI+PE L R+ Sbjct: 345 AAQAISERG-----TVTICTARAGDKVS------------VSISDTGHGIAPENLNRIFE 387 Query: 396 -----GPVASSSGGSGIGLMLATASATHLGGKLKLRSSPGQGTVAQLRFPL 441 PV S G+G+GL L+ GG +++ S+PG GT + P+ Sbjct: 388 PFFTTKPVGS---GTGLGLSLSYGIVKKHGGDIRVSSAPGCGTTFTIELPI 435 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,043,169 Number of extensions: 31523 Number of successful extensions: 237 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 8 Length of query: 442 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 354 Effective length of database: 1,203,190 Effective search space: 425929260 Effective search space used: 425929260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)