BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0078.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311918|ref|YP_003776010.1| glycerophosphoryl diester phosp...   513   e-147

>gi|300311918|ref|YP_003776010.1| glycerophosphoryl diester
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 315

 Score =  513 bits (1320), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/317 (82%), Positives = 281/317 (88%), Gaps = 8/317 (2%)

Query: 1   MHSLGRF------LLTCTFCLLMDQALAQAAPLAWRQSALTTATGPVLVSSHRSCWTETS 54
           M SLGRF      L TC FCLLMD A A +  L WRQSALTT TGPVLVSSHRSCWTETS
Sbjct: 1   MPSLGRFFAILSLLATCNFCLLMDPAHADS--LTWRQSALTTPTGPVLVSSHRSCWTETS 58

Query: 55  ENSLDGIRRCIAEGIDIGEIDVRTTRDGALVLMHDKTVDRTTNGHGAVADLTLAEIQALQ 114
           ENSLDGIRRCIAEGIDIGEIDVRTT+DGALVLMHD+TVDRTTNG GAV +LTLA+IQ L+
Sbjct: 59  ENSLDGIRRCIAEGIDIGEIDVRTTQDGALVLMHDQTVDRTTNGRGAVTELTLAQIQDLR 118

Query: 115 LYARGGGKGASLTARRVPTLQEALAAARGRILLNLDVKAADIGPMVAAILETDTARDVLL 174
           LY RGG +GA+LT+RRVPTLQ+ALA ARGRI+LNLDVK ADIG MVAAILETDTARDVLL
Sbjct: 119 LYTRGGRQGATLTSRRVPTLQQALAVARGRIVLNLDVKDADIGAMVAAILETDTARDVLL 178

Query: 175 NINAGVDAQQVAWARSLGIAVQTLYFDEKTGASARSGQLQTMARQEPTVLQIIFRDPAVV 234
           NIN GVD QQVAWARSLGIAVQTLYFDEKTGAS+RS QLQ MARQEPTVLQ+IFRDP+VV
Sbjct: 179 NINPGVDPQQVAWARSLGIAVQTLYFDEKTGASSRSAQLQVMARQEPTVLQLIFRDPSVV 238

Query: 235 GEAVQAIGRRPVRLLVNTMAIDIDSGRPMDLAGPYLDTVAVVHPEQVWGKLIASGVSIIQ 294
             A +A+  RPVR+LVNTMA+DIDSGRPMDLAGPYLDTVAV  PEQVWG+LIA GVSIIQ
Sbjct: 239 DAAGRALAGRPVRMLVNTMALDIDSGRPMDLAGPYLDTVAVDDPEQVWGQLIAQGVSIIQ 298

Query: 295 TDEPQRLLAWLKRKKLR 311
           TDEPQRLLAWL+R+KLR
Sbjct: 299 TDEPQRLLAWLRRRKLR 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 925,874
Number of extensions: 39095
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)