BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0071.p
         (952 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311923|ref|YP_003776015.1| TonB-dependent outer membrane F...  1745   0.0  

>gi|300311923|ref|YP_003776015.1| TonB-dependent outer membrane Fe
           receptor protein [Herbaspirillum seropedicae SmR1]
          Length = 931

 Score = 1745 bits (4519), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 857/935 (91%), Positives = 894/935 (95%), Gaps = 6/935 (0%)

Query: 20  MSYRSGSPQYRRLSL--MSLAMLSVLPLLARAADDTAPPAATAQADGVPAAQDGSVKRLD 77
           MSYRSGS  YRRLSL  MSLA+LSVLPLLA+AAD+T    AT  +    A Q+GSVKRLD
Sbjct: 1   MSYRSGSQHYRRLSLTLMSLAILSVLPLLAQAADETPVGEATPGS----ATQEGSVKRLD 56

Query: 78  SVVVTRKRSQTSAAVAGKQVEERVMDSVTREQVERLPDSTVTDVVKRVAGVSVSFNPDNV 137
           SVVVTRKRSQTSAAVAGKQVE+RVMDSVTREQVERLPDSTVTDVV+RVAGVSV+FNPDNV
Sbjct: 57  SVVVTRKRSQTSAAVAGKQVEDRVMDSVTREQVERLPDSTVTDVVRRVAGVSVTFNPDNV 116

Query: 138 NGRDKAQFIAIRGLDGSYNNVTINGAPLASVDQTTRSARTNMLPASMVKEVQVFKTWTPD 197
           NGRDKAQFIAIRGLDGSYNNVTINGAP+ASVDQTTRSARTNMLPASMVKEVQVFKTWTPD
Sbjct: 117 NGRDKAQFIAIRGLDGSYNNVTINGAPMASVDQTTRSARTNMLPASMVKEVQVFKTWTPD 176

Query: 198 MDPNAVGGSVNIVSRSAFDNGGKPMFSATGALGHAGGSGKVASGAEGLAKKSDVTFSNTF 257
           MDPNAVGGSVNIVSRSAFDNGGKP FSATGA+GHA G+GKVASGAEGLAKKSDVTFSNTF
Sbjct: 177 MDPNAVGGSVNIVSRSAFDNGGKPTFSATGAVGHAAGTGKVASGAEGLAKKSDVTFSNTF 236

Query: 258 GPDNRFGYVISANFEKENTVSIGHMTTDNIFYNYYNANGSIANPAASGGPNTGNGFPVPQ 317
           GPD RFGYVISANFEKENTVSIGHMTTDNIFYNYYNANGSIANPA+SGGPNTGNGFPVPQ
Sbjct: 237 GPDQRFGYVISANFEKENTVSIGHMTTDNIFYNYYNANGSIANPASSGGPNTGNGFPVPQ 296

Query: 318 QFKYWQHLKNSETSGFNAKLEGRFTPDVYGFLGFGYNSDSTHILRNETFIDDSRSTGNNP 377
           QFKYWQHLKNSETSGFNAKLEGRFTPD+ GF+GFGYNSDSTHILRNETFIDDSRSTGNNP
Sbjct: 297 QFKYWQHLKNSETSGFNAKLEGRFTPDLNGFVGFGYNSDSTHILRNETFIDDSRSTGNNP 356

Query: 378 VLNQTATSGQFARGEAEAGYAASTIKRTTSALQGGLDWKLDDNQVLSLRSSYSQAQHREP 437
           V NQT TSGQFA GEAEAGYAASTIKRTTS LQGGLDWKLDD+QVLSLRSS+SQA+HREP
Sbjct: 357 VQNQTPTSGQFALGEAEAGYAASTIKRTTSVLQGGLDWKLDDSQVLSLRSSFSQAKHREP 416

Query: 438 RELAKYIFANFSYPGAGSAPVLSGTNALGMSYNTSGFEPSVALNNPSNFTNLNNWQAYYW 497
           RELAKYIFANF+YPGAGSAPVLSGTNALGMSYNTSGFEPSVALNNPSNFTNLNNWQAYYW
Sbjct: 417 RELAKYIFANFAYPGAGSAPVLSGTNALGMSYNTSGFEPSVALNNPSNFTNLNNWQAYYW 476

Query: 498 RKEMVSIDDQVGDVKLDYRWNMDQDARGLGAGVGVDCRRLEHSYDYVNNQYFPTSGGLTL 557
           RKEMV IDDQVGDVKLDYRWNMDQDARGLGAGVGVD RRLEHSYDYVNNQY+PTSGGLTL
Sbjct: 477 RKEMVKIDDQVGDVKLDYRWNMDQDARGLGAGVGVDYRRLEHSYDYVNNQYYPTSGGLTL 536

Query: 558 AGNGSVSGTIMPYSGGLPFILVNGAQAWQQFAANQGQIAASSANSVNSLQSNYSHSEQTA 617
           AGNGSVS TIMPYSGGLPFILVNG QAWQQFAANQGQIAASS NSVNSLQSNYSHSEQTA
Sbjct: 537 AGNGSVSSTIMPYSGGLPFILVNGGQAWQQFAANQGQIAASSGNSVNSLQSNYSHSEQTA 596

Query: 618 ALYAMGSYRTDRWSALFGLRQDNTNLSTTGNVRNVSNGSTTWVSQTKDSSYNYLLPAASL 677
           ALYAM SYRTD+WS LFGLRQDNTN STTGNVRNVSNG+TTW SQTKDSSY YLLPAASL
Sbjct: 597 ALYAMASYRTDQWSGLFGLRQDNTNHSTTGNVRNVSNGATTWASQTKDSSYRYLLPAASL 656

Query: 678 VFSATDAVKLKLAASQTIGRPNYDAYAPNTTISQNTDGSVTVTQGNPDIKPRESTNLDAS 737
           +FSATD VKLKLAAS+TIGRPN+DAYAPNTTI+QNTDGSVTVTQGNPDIKPRESTNLDAS
Sbjct: 657 IFSATDDVKLKLAASKTIGRPNFDAYAPNTTINQNTDGSVTVTQGNPDIKPRESTNLDAS 716

Query: 738 AEWYLPNSSLVSLAVFNKKIKNEIYTLSSQGTLFYNGATRAASITQPVNASSSRINGVEL 797
           AEWYLP SSL+S+A+FNKKIKNEIYTLSSQG+LFYNGATRAASI+QPVNASSSRINGVEL
Sbjct: 717 AEWYLPRSSLLSVALFNKKIKNEIYTLSSQGSLFYNGATRAASISQPVNASSSRINGVEL 776

Query: 798 SYVQSSLGWISPALQGLGFSANLSFLDGRLNAATSSGGTRTIQNLVNQPDQIRNLTVFYN 857
           SYVQ SLGWISPALQGLGFSANLSF DGRLNAA S+GGTRTIQNLVNQPDQIRNLTVFYN
Sbjct: 777 SYVQGSLGWISPALQGLGFSANLSFFDGRLNAAASNGGTRTIQNLVNQPDQIRNLTVFYN 836

Query: 858 YQKLDLSAAYNWTGRSLRLVDASLPSQDVYWQARKQIDLQARYDLGGGWRAFAEVANLTN 917
           YQKLD+SAAYNWTGRSLRLVD+SL S+DVYWQARKQIDLQARYDLG GWRAFAEVANLTN
Sbjct: 837 YQKLDVSAAYNWTGRSLRLVDSSLASRDVYWQARKQIDLQARYDLGQGWRAFAEVANLTN 896

Query: 918 SPVTSVTGPNKDQLKDTFSMGRMIWLGVNYSPKNL 952
           SPVTSVTGPNKD LKDTFSMGRMIW+G+NYSPK+L
Sbjct: 897 SPVTSVTGPNKDLLKDTFSMGRMIWVGLNYSPKDL 931


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,885,531
Number of extensions: 119166
Number of successful extensions: 315
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 1
Length of query: 952
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 858
Effective length of database: 1,174,780
Effective search space: 1007961240
Effective search space used: 1007961240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 135 (56.6 bits)