BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0067.p (209 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311926|ref|YP_003776018.1| glycerol-3-phosphate ABC transp... 347 5e-97 gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC tra... 165 2e-42 gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease ... 80 1e-16 gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease ... 74 7e-15 gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease ... 66 2e-12 >gi|300311926|ref|YP_003776018.1| glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 347 bits (889), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 198/209 (94%), Positives = 204/209 (97%) Query: 1 VTLALALAACLELDVRAKRLLRSIFIWPYAVAGVVVGIVLKVLINPVTGLLAFLNHLWPG 60 VT+ALALAACLELDVRAKRLLRSIFIWPYAVAGVVVGIVLKVLINPVTGLLAFLN LWPG Sbjct: 86 VTIALALAACLELDVRAKRLLRSIFIWPYAVAGVVVGIVLKVLINPVTGLLAFLNQLWPG 145 Query: 61 LWAPHLAGQQAMLVLIAAFAWTQVPLNFILFSAALQRIPADLTGAAAIDGAGPWRRFMDI 120 +WAPHL G QAML LIAAFAWTQVPLNFILFSAALQRIPADL GAAAIDGAGPWRRF+DI Sbjct: 146 VWAPHLIGAQAMLALIAAFAWTQVPLNFILFSAALQRIPADLMGAAAIDGAGPWRRFIDI 205 Query: 121 QLPMIAPALLLAGVLNVIEAFTHGFGLVDALTQGGPGRSTAILAYQIYSDGFIGLDLSGS 180 QLPMIAPALLLAGV+NVIEAFTHGFGLVDALTQGGPGRSTAILAYQIYSDGFIGLDLSGS Sbjct: 206 QLPMIAPALLLAGVINVIEAFTHGFGLVDALTQGGPGRSTAILAYQIYSDGFIGLDLSGS 265 Query: 181 SALSVILMLFIVALTVLQLRFFRQGAGRW 209 SALSV+LMLFIVALT+LQLRFFRQGAGRW Sbjct: 266 SALSVVLMLFIVALTLLQLRFFRQGAGRW 294 >gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 165 bits (418), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 90/205 (43%), Positives = 128/205 (62%), Gaps = 6/205 (2%) Query: 3 LALALAACLELDVRAKRLLRSIFIWPYAVAGVVVGIVLKVLINPVTGLLAFLNHL--WPG 60 L+L LA + R + ++ IWPYAV+ VVVG++ L++P G+L +H+ W G Sbjct: 88 LSLLLAVFADRVRRGASIYKTFLIWPYAVSPVVVGVLWMFLLSPSLGIL---SHVLSWLG 144 Query: 61 L-WAPHLAGQQAMLVLIAAFAWTQVPLNFILFSAALQRIPADLTGAAAIDGAGPWRRFMD 119 L W + G AM++++ A W Q+ NF+ F A LQ IP L AAAIDGAGP +RF Sbjct: 145 LPWDYMINGTHAMILIVIAAIWKQISYNFLFFLAGLQSIPKSLIEAAAIDGAGPVKRFFT 204 Query: 120 IQLPMIAPALLLAGVLNVIEAFTHGFGLVDALTQGGPGRSTAILAYQIYSDGFIGLDLSG 179 I P+I+P V+NV+ AF F +VDA T GGPG+ T IL Y+++SDGF G DL G Sbjct: 205 IVFPLISPTTFFLFVVNVVYAFFDTFVIVDATTHGGPGKDTEILVYKVFSDGFKGGDLGG 264 Query: 180 SSALSVILMLFIVALTVLQLRFFRQ 204 S+A SV+LM ++ LTV+Q ++ + Sbjct: 265 SAAQSVVLMALVILLTVVQFKYVEK 289 >gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 6/199 (3%) Query: 3 LALALAACLELDVRAKRLLRSIFIWPYAVAGVVVGIVLKVLINPVTGLLAFLNHLWPGLW 62 + LA+A L V R+++S+F P+ ++GVVVG++ +P GLL+ L G Sbjct: 111 MGLAIALYLNQKVIGMRVVKSLFFAPFVLSGVVVGLMYSWFYDPSFGLLSLLF----GQG 166 Query: 63 APHLA-GQQAMLVLIAAFAWTQVPLNFILFSAALQRIPADLTGAAAIDGAGPWRRFMDIQ 121 P L + A +I A W Q ILF L + D AA ++GA W + Sbjct: 167 VPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALNHDQVEAARMEGAKGWTMLRYVI 226 Query: 122 LPMIAPALLLAGVLNVIEAFTHGFGLVDALTQGGPGRSTAILAYQIYSDGFIGLDLSGSS 181 LP + +A V+++I A F L+ +T GGP S+ +LAY Y S+ Sbjct: 227 LPQLRSTTFMAFVVSIIGAL-RSFDLISVMTSGGPYESSTVLAYYAYDQAIKYYRQGYSA 285 Query: 182 ALSVILMLFIVALTVLQLR 200 A++V L ++ V QLR Sbjct: 286 AVAVTLFAIMLVYIVYQLR 304 >gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 74.3 bits (181), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 5/178 (2%) Query: 7 LAACLELDVRAKRLLRSIFIWPYAVAGVVVGIVLKVLI-NPVTGLLAF-LNHLWPGLWAP 64 LA + R + + R + I P+ V V ++ K +I +PV G+LA+ + HL GL Sbjct: 120 LAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYGILAYVMRHL--GLEPI 177 Query: 65 HLAGQQAMLVLIAAFAWTQVPLNFILFSAALQRIPADLTGAAAIDGAGPWRRFMDIQLPM 124 + ML +I AW +P F++ ALQ + D AA +DGAGP R F I LP Sbjct: 178 DWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQLDGAGPVRIFFYIVLPH 237 Query: 125 IAPALLLAGVLNVIEAFTHGFGLVDALTQGGPGRSTAILAYQIYSDGFIGLDLSGSSA 182 + A+ + ++ I + F + T GGPG +T L + +YS G D+ +SA Sbjct: 238 LKRAITVVIMIETIFLLSV-FAEIFTTTAGGPGTATTNLTFLVYSIGLQQFDIGIASA 294 >gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 27/223 (12%) Query: 3 LALALAACLELDVRAKRLLRSIFIWPYAVAGVVVGIVLKVLINPVTGLLAFLNHLWPGLW 62 L L LA L +V K R+I + P+ V + + L + +++ W Sbjct: 87 LGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWLYDAQFSVIS---------W 137 Query: 63 APHLAG------------QQAMLVLIAAFAWTQVPLNFILFSAALQRIPADLTGAAAIDG 110 A H G A + A W +P I A LQ I L AAAIDG Sbjct: 138 ALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLYEAAAIDG 197 Query: 111 AGPWRRFMDIQLPMIAPALLLAGVLNVIEAFTHGFGLVDALTQGGPGRSTAILAYQIYSD 170 A PW++F + LP++ P + + +V+ FT F L+ LT+GGP +T ++A + Sbjct: 198 ATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTD-FQLIYVLTRGGPLNATHLMATLSFQR 256 Query: 171 GFIGLDLSGSSALSVILMLFIVALTV-----LQLRFFRQGAGR 208 G L +AL+ ++ F++A + LQ R ++QG + Sbjct: 257 AIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 299 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.143 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 613,637 Number of extensions: 26542 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 9 Length of query: 209 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 128 Effective length of database: 1,236,335 Effective search space: 158250880 Effective search space used: 158250880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)