BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0066.p (298 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311927|ref|YP_003776019.1| glycerol-3-phosphate ABC transp... 466 e-132 gi|300313087|ref|YP_003777179.1| sn-glycerol-3-phosphate ABC tra... 199 3e-52 gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease ... 100 2e-22 gi|300312389|ref|YP_003776481.1| sugar ABC transporter permease ... 97 2e-21 gi|300312637|ref|YP_003776729.1| sugar ABC transporter permease ... 73 3e-14 >gi|300311927|ref|YP_003776019.1| glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 298 Score = 466 bits (1199), Expect = e-132, Method: Compositional matrix adjust. Identities = 273/298 (91%), Positives = 289/298 (96%) Query: 1 MVERHPRMTALAYCILGLGVVLALGPLYLILCSASVSSQQWISQGMPLMPGTALPDNLRE 60 MVERHPRMTALAYC+LGLG++LALGPLYLILCSASV+SQ WISQGMPL PGTAL +NLRE Sbjct: 1 MVERHPRMTALAYCVLGLGLLLALGPLYLILCSASVTSQAWISQGMPLTPGTALLENLRE 60 Query: 61 VAQRIDLWRYLFNSLLVAALVVTGKLLLSSVTAFAVTYFQPRCRGLILVLLFSALLLPLE 120 VAQRIDLWRYLFNSLLVA+LVV+GKLLLSSVTAFAV+YF+PRCRGLILVLLFSALLLPLE Sbjct: 61 VAQRIDLWRYLFNSLLVASLVVSGKLLLSSVTAFAVSYFRPRCRGLILVLLFSALLLPLE 120 Query: 121 VRIVPTYAAASDLFEPLRSLLQALGLSGQHAVPSINLINTYAGLSLPLVASATGTFLFLQ 180 VRIVPTYAAASDL EPLRSLLQAL LSGQ AVPSI+L+NTYAGLSLPLVASATGTFLFLQ Sbjct: 121 VRIVPTYAAASDLLEPLRSLLQALDLSGQQAVPSISLVNTYAGLSLPLVASATGTFLFLQ 180 Query: 181 FYRTIPPELVEAARIDGTGPWRFYVDILLPLSKTNFAALGSIVFINTWKDYMWPLVITSH 240 FYRTIPPELVEAARIDG GPWRFYVDILLPLSKTNFAALG+IVFI+TWKDYMWPLVITSH Sbjct: 181 FYRTIPPELVEAARIDGAGPWRFYVDILLPLSKTNFAALGAIVFISTWKDYMWPLVITSH 240 Query: 241 DQMRTITLALASFLPVESGQMPQWNLLMAAALVAIVIPAVFVVAAQRWFVKGIVGTEK 298 +QMRTITLA+ASFLPVESGQMPQWNLLMAAAL AI +PAVFVVAAQRWFVKGIVGTEK Sbjct: 241 EQMRTITLAMASFLPVESGQMPQWNLLMAAALAAIAVPAVFVVAAQRWFVKGIVGTEK 298 >gi|300313087|ref|YP_003777179.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 199 bits (505), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 179/306 (58%), Gaps = 31/306 (10%) Query: 1 MVERHPRMTALAYCILGLGVVLALGPLYLILCSASVSSQQWISQGMPLMPGTALPDNLRE 60 M+ER P + L++ +L LGV++ PLY+ +++ S++Q + L PG +N Sbjct: 1 MIERRPILDFLSHVVLVLGVLIVFFPLYVAFVASTQSAEQSALSPLSLAPGGEFMNNYST 60 Query: 61 V-----AQRID---LWRYLFNSLLVAALVVTGKLLLSSVTAFAVTYFQPRCRGLILVLLF 112 V A ++ + L+ SL A ++ GK+ +S ++AFA+ YF+ RGL ++F Sbjct: 61 VLFKGAAGQVTAPPVLHMLWVSLATALIIAIGKISISMLSAFAIVYFRFPGRGLFFWMIF 120 Query: 113 SALLLPLEVRIVPTYAAASDLFEPLRSLLQALGLSGQHAVPSINLINTYAGLSLPLVASA 172 L+LP+EVRI PTY SDL ++N+YAGLS+PL+ASA Sbjct: 121 VTLMLPVEVRITPTYQVVSDL----------------------GMLNSYAGLSVPLIASA 158 Query: 173 TGTFLFLQFYRTIPPELVEAARIDGTGPWRFYVDILLPLSKTNFAALGSIVFINTWKDYM 232 T TFLF QF+ T+P EL EAARIDG GP RF D+L PLS+TN AL I+FI W Y+ Sbjct: 159 TATFLFRQFFLTVPDELAEAARIDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYL 218 Query: 233 WPLVITSHDQMRTITLALASFLPVESGQMPQWNLLMAAALVAIVIPAVFVVAAQRWFVKG 292 WPL+I + M I + + + + + +WNL+MA ++A++ P + VV Q+WFVKG Sbjct: 219 WPLIIATDTSMYPIGIGIKTLISGGDSAV-EWNLVMATMILAMLPPGLVVVVMQKWFVKG 277 Query: 293 IVGTEK 298 +V +EK Sbjct: 278 LVDSEK 283 >gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 99.8 bits (247), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 30/250 (12%) Query: 53 ALPDNLREVAQRIDLWRYLFNSLLVAALVVTGKLLLSSVTAFAVTYFQPRCRGLILVLLF 112 A+ +N RE + Y +NS L+ V G + L+++ FA++ +Q R ++ Sbjct: 59 AMLENYREALTASPMLHYFWNSCLITIPSVIGAISLAAMAGFALSTYQFRGNTVLFATFV 118 Query: 113 SALLLPLEVRIVPTYAAASDLFEPLRSLLQALGLSGQHAVPSINLINTYAGLSLPLVASA 172 + +P ++ ++P +R L +LGL NT G+ L +A Sbjct: 119 ACNFVPQQILMIP-----------VRDLSLSLGL-----------FNTITGMMLFHIAMQ 156 Query: 173 TG--TFLFLQFYRTIPPELVEAARIDGTGPWRFYVDILLPLSKTNFAALGSIVFINTWKD 230 TG T F + +P E++EAARI+G W + I+LPL + AAL +VF W D Sbjct: 157 TGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFYRIVLPLIRPALAALAVLVFTFVWND 216 Query: 231 YMWPLVITSHDQMRTITLALASFLPVESGQ-MPQWNLLMAAALVAIVIPAVFVVAAQRWF 289 Y W LV+T D + IT+ +A+ GQ WNL+ A +++A + + Q+ F Sbjct: 217 YFWALVLTQGDDVAPITVGVAAL----RGQWTTAWNLVSAGSILAALPSVILFFVMQKQF 272 Query: 290 VKGIV-GTEK 298 V G+ G K Sbjct: 273 VAGLTFGASK 282 >gi|300312389|ref|YP_003776481.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 276 Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 113/226 (50%), Gaps = 24/226 (10%) Query: 69 RYLFNSLLVAALVVTGKLLLSSVTAFAVTYFQPRCRGLILVLLFSALLLPLEVRIVPTYA 128 RY N+ L+ +++ +L+L+++ A+A F R ++ +L+ L++ ++ IV Y Sbjct: 70 RYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENY- 128 Query: 129 AASDLFEPLRSLLQALGLSGQHAVPSINLINTYAGLSLPLVASATGTFLFLQFYRTIPPE 188 Q + L G L +T + LP ASA G FL Q ++T+P E Sbjct: 129 -------------QTMNLLG--------LRDTILSIGLPYFASAFGIFLLRQTFKTVPRE 167 Query: 189 LVEAARIDGTGPWRFYVDILLPLSKTNFAALGSIVFINTWKDYMWPLVITSHDQMRTITL 248 L EAA ++G W+ + + +PL++ + A G + W +++WPL++T+ + R +T+ Sbjct: 168 LDEAATVEGASAWQILMQVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTV 227 Query: 249 ALASFLPVESGQMPQWNLLMAAALVAIVIPAVFVVAAQRWFVKGIV 294 L F + G W+++ AA L+ + + QR FV+ + Sbjct: 228 GLQVFSSTDQGV--DWSIITAATLMTSAPLLLAFLLFQRQFVQSFM 271 >gi|300312637|ref|YP_003776729.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 22/229 (9%) Query: 70 YLFNSLLVAALVVTGKLLLSSVTAFAVTYFQPRCRGLILVLLFSALLLPLEVRIVPTYAA 129 +L N+++V+ + L S A+A+ + + + + +F A L+P Sbjct: 86 WLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLIP----------- 134 Query: 130 ASDLFEPLRSLLQALGLSGQHAVPSINLINTYAGLSLPLVASATGTFLFLQFYRTIPPEL 189 S LF PL +++ LGL LI TY +P T+L + ++R+IP EL Sbjct: 135 PSILFIPLAAIVFKLGLFDTRWA----LILTYPTFLIPFC-----TWLLMGYFRSIPYEL 185 Query: 190 VEAARIDGTGPWRFYVDILLPLSKTNFAALGSIVFINTWKDYMWPLVITSHDQMRTITLA 249 E A IDG W V I+LPL+ + G F +W ++++ L S +++T+ + Sbjct: 186 EECALIDGATRWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVPVG 245 Query: 250 LASFLPVESGQMPQWNLLMAAALVAIVIPAVFVVAAQRWFVKGIVGTEK 298 + + L VE G + W LMA AL+ + AV ++V G+ G K Sbjct: 246 IVTEL-VE-GDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVK 292 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 792,817 Number of extensions: 28640 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 8 Length of query: 298 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 213 Effective length of database: 1,217,395 Effective search space: 259305135 Effective search space used: 259305135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)