BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0064.p (303 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 555 e-159 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 187 7e-49 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 173 2e-44 gi|300312244|ref|YP_003776336.1| LysR family transcription regul... 172 4e-44 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 169 2e-43 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 555 bits (1431), Expect = e-159, Method: Compositional matrix adjust. Identities = 270/301 (89%), Positives = 288/301 (95%) Query: 1 MRNFDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLEARLGVRLFARTTRQ 60 MR+FDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLE+RLGVRLFARTTRQ Sbjct: 1 MRSFDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQ 60 Query: 61 IRLTREGELYHEQCRQALEQIAEAERILTGQQKVPSGPLRISVGTPYAHYRLLPLLPRFQ 120 IRLTREGELY +QC+QALEQIA+AERILTGQQKVPSG LRISVGTPYAHYRLLPLLPRFQ Sbjct: 61 IRLTREGELYRDQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQ 120 Query: 121 AAFPQIEVELSIANRVIDFVEEGYDLAIRLGVPQDSRLIAHTLEDATLGVFAAPSYLTRR 180 A+PQIEVELSIANRV+DFVEEGYDLAIRLGVP DSRLIAHTLE+ATLG+FAAP+YL RR Sbjct: 121 QAYPQIEVELSIANRVVDFVEEGYDLAIRLGVPPDSRLIAHTLEEATLGLFAAPAYLARR 180 Query: 181 GTPDSVEALKQHDCIQFILPSTGRAMPWIFKDGQGRDMDFHFRSRQRIHDDVLGCVNWAI 240 G P S+ L+QHDCIQFILPS+GRAMPWIFKD QGRDMDFHF+SRQRIHDDVLGCVNWAI Sbjct: 181 GQPRSIAELEQHDCIQFILPSSGRAMPWIFKDAQGRDMDFHFKSRQRIHDDVLGCVNWAI 240 Query: 241 AGGGLFQIYHFIAQAAVQRGELVEVLQSAGHRTRRFSILYPHNRHLSARVRAFVDFVMQA 300 AGGGLFQIYHFIA AAV+RGELVEVLQ AG+RTRRFSILYPHNRHLSARVRAFV+F+ QA Sbjct: 241 AGGGLFQIYHFIADAAVRRGELVEVLQQAGYRTRRFSILYPHNRHLSARVRAFVEFLRQA 300 Query: 301 V 301 V Sbjct: 301 V 301 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 187 bits (476), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 107/294 (36%), Positives = 164/294 (55%), Gaps = 6/294 (2%) Query: 8 QLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLEARLGVRLFARTTRQIRLTREG 67 +L IE F A+LGSF AAEALG++ A+VSR++ LEARLG RL RTTR++ LT G Sbjct: 3 KLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAG 62 Query: 68 ELYHEQCRQALEQIAEAERILTGQQKVPSGPLRISVGTPYAHYRLLPLLPRFQAAFPQIE 127 LY E+C+Q + + EA+ +L+ P+G LRI+ + L PL P F P+I Sbjct: 63 ALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEIS 122 Query: 128 VELSIANRVIDFVEEGYDLAIRLGVPQDSRLIAHTLEDATLGVFAAPSYLTRRGTPDSVE 187 +++++++R++D ++EGYD+AIR+ DS L+ L +L V A+P+YL GTP Sbjct: 123 LDITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPH 182 Query: 188 ALKQHDCIQFILPSTGRAMPWIFKDGQGRDMDFHFRSRQRIH-DDVLGCVNWAIAGGGLF 246 L QH I + + W F +G R R+H ++ CV A+ G G+ Sbjct: 183 ELAQHQTISYSYNQSKDE--WQFNGPEG---PVSVRVSSRLHVNNGDSCVQAALGGIGIT 237 Query: 247 QIYHFIAQAAVQRGELVEVLQSAGHRTRRFSILYPHNRHLSARVRAFVDFVMQA 300 + F+ ++ G+LV +L G +YP HL A++RA +DF+ +A Sbjct: 238 RQPTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEA 291 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 173 bits (438), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 153/290 (52%), Gaps = 4/290 (1%) Query: 11 SIELFCKAAELGSFTAAAEALGLTPASVSRSISRLEARLGVRLFARTTRQIRLTREGELY 70 ++++F + SFT AA+ L L +V+ + LE+ L VRL RTTR+I LT +G Y Sbjct: 6 AMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTPDGAAY 65 Query: 71 HEQCRQALEQIAEAERILTGQQKVPSGPLRISVGTPYAHYRLLPLLPRFQAAFPQIEVEL 130 +E+C + L + E E+ + P G LRI V LLP L F +P IE+ + Sbjct: 66 YERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDIELMM 125 Query: 131 SIANRVIDFVEEGYDLAIRLGVPQDSRLIAHTLEDATLGVFAAPSYLTRRGTPDSVEALK 190 + +R +D V+E D IR+G QDS ++A + AAP+YL R G P ++E L+ Sbjct: 126 GMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHTIEDLQ 185 Query: 191 QHDCIQFILPSTGRAMPWIF-KDGQGRDMDFHFRSRQRIHDDVLGCVNWAIAGGGLFQIY 249 QH + + TGR + W F +G R++ + + D + C A+ G G+ Q Sbjct: 186 QHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVEC---ALQGFGMVQAP 242 Query: 250 HFIAQAAVQRGELVEVLQSAGHRTRRFSILYPHNRHLSARVRAFVDFVMQ 299 ++ + G LVEVL S++Y HNRHLS +VRAFVD+V + Sbjct: 243 LYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAE 292 >gi|300312244|ref|YP_003776336.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 172 bits (435), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 107/298 (35%), Positives = 165/298 (55%), Gaps = 10/298 (3%) Query: 7 VQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLEARLGVRLFARTTRQIRLTRE 66 +Q + F E G+ +AAAE L T + VSR++SRLE +LG L RTTR++ LT E Sbjct: 3 LQSEELRTFVAVVEAGTLSAAAELLAQTTSGVSRALSRLEDKLGASLLTRTTRRMELTEE 62 Query: 67 GELYHEQCRQALEQIAEAERILTGQQKVPSGPLRISVGTPYAHYRLLPLLPRFQAAFPQI 126 G + EQ R L + A+ + + + P G LR+ P+ + ++P + +F+AA+P I Sbjct: 63 GRAFLEQARAILAAMESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYPDI 122 Query: 127 EVELSIANRVIDFVEEGYDLAIRLGVPQDSRLIAHTLEDATLGVFAAPSYLTRRGTPDSV 186 E+EL+ +R ID VE D+AIR+G QDS L A L A L V A+P+YL R G P+SV Sbjct: 123 ELELTTNDRFIDLVEHRADIAIRIGELQDSSLHARALSSARLNVVASPAYLARHGEPESV 182 Query: 187 EALKQHDCIQFILPSTGRAMPWIFKDGQGRDMDFHFRSRQRIHDDVLGCV-NWAIAGGGL 245 EAL+QH I F P P G +++R I + + A+ G G+ Sbjct: 183 EALEQHQLIGFSQPDQLNHWPLRHSAGD------RYQTRPAIRASSGETIRHLALQGQGI 236 Query: 246 FQIYHFIAQAAVQRGELVEVLQSA--GHRTRRFSILYPHNRHLSARVRAFVDFVMQAV 301 + +F++ A + G LV +L A G+R ++ S +Y ++ LS R+ F+DF+ + + Sbjct: 237 ACLSNFMSDADIAAGRLVRLLPQADSGYR-QKISAVYYYSTQLSRRISCFLDFLQEKL 293 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 169 bits (429), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/293 (35%), Positives = 152/293 (51%), Gaps = 4/293 (1%) Query: 8 QLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLEARLGVRLFARTTRQIRLTREG 67 Q I F + A GS +AAA A G+ PA + R + LE RLGV+L RTTR+I LT EG Sbjct: 3 QFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNEG 62 Query: 68 ELYHEQCRQALEQIAEAERILTGQQKVPSGPLRISVGTPYAHYRLLPLLPRFQAAFPQIE 127 + E C++ L + +AE ++ + SG L IS + + PLLP F A + Sbjct: 63 AAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDVT 122 Query: 128 VELSIANRVIDFVEEGYDLAIRLGVPQDSRLIAHTLEDATLGVFAAPSYLTRRGTPDSVE 187 + L++ +R+ D + EG D+AIR+ DS L++ L + + AAP+YL R GTP S + Sbjct: 123 LTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSPD 182 Query: 188 ALKQHDCIQFILPSTGRAMPWIFKDGQGRDMDFHFRSRQRIHDDVLGCVNWAIAGGGLFQ 247 L +H+C+ + S G W + Q + + + +D NWA+AG GL Sbjct: 183 ELMRHNCLA--MSSEGSQRGWTLR--QSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAW 238 Query: 248 IYHFIAQAAVQRGELVEVLQSAGHRTRRFSILYPHNRHLSARVRAFVDFVMQA 300 + AA++ GELV VL ++ RHL R+RAFVDF+ A Sbjct: 239 RSMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHA 291 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 934,267 Number of extensions: 39672 Number of successful extensions: 302 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 64 Length of query: 303 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 218 Effective length of database: 1,217,395 Effective search space: 265392110 Effective search space used: 265392110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)