BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0062.p (528 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II ... 662 0.0 gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 230 2e-61 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 207 2e-54 gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 206 4e-54 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 197 2e-51 >gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/523 (72%), Positives = 441/523 (84%), Gaps = 3/523 (0%) Query: 1 VQRKLTVTARLAILVAVLCGSVVLLAWRDIQGMASSNDKLRYVYEDRTMALIHIARVRDA 60 VQ KL+VTARL +L+A+LC SV+LLAWRD+ GMASSNDKL+YVYEDRTMALIHIARVRDA Sbjct: 15 VQGKLSVTARLGLLLALLCASVLLLAWRDMLGMASSNDKLKYVYEDRTMALIHIARVRDA 74 Query: 61 LYLNRDVMGRALMMANLPA-PAIDDSNGTSSDRIKPLLERIPALDATFEQGWQAYRATRL 119 LY NRD+MGRALMMANL P DDS S+ RIK L + ALDA+F +GW+AYR TRL Sbjct: 75 LYQNRDLMGRALMMANLRTDPNADDS--VSAARIKQNLGGMAALDASFREGWKAYRDTRL 132 Query: 120 EPQEQTEAERFEQSWRRYVAERAVVLDLLRSNEPLQANRRWTPLTSELAGLATQLAALGQ 179 P+E T A RFE+ W+ Y++ER ++ L+ + EPLQANRRWT LT++LA LA L+ LG+ Sbjct: 133 SPEETTLAGRFEERWQTYLSERDQIITLIANGEPLQANRRWTALTTQLADLAGLLSKLGR 192 Query: 180 LQESFTRTSYEAALEDYRQLRTHNLQIAGLALAIGVAIALWIMISLRRQLGGEPDYAAHI 239 LQES T ++YE A +Y++LRTHNL+IAGL LA+G+A+ALWI+ +RR+LGGEP YAA I Sbjct: 193 LQESLTGSAYEEARNEYQRLRTHNLEIAGLTLALGLALALWIIAGVRRELGGEPAYAADI 252 Query: 240 VHQIAEGNLGVAVTLRRRDRSSLLYAMQGMRERLTDILRGVTLLTQALGDSARQLNATAQ 299 V QIA+GNL V V LR DRSSLLYAM MR RLT+I+R VTL TQALG S+RQLNATA Sbjct: 253 VRQIADGNLCVEVNLRSNDRSSLLYAMHTMRARLTEIMRNVTLSTQALGVSSRQLNATAH 312 Query: 300 DLASASNEQAAAVEEVHSAISNISLAIQQTGEHARRTDQIALNAAADADQSGAAVQSTVA 359 LA AS+EQAAAVEEVH AI++++ AIQQTGEHARRT+QIA+ AA+DAD+SGAAVQ+TV Sbjct: 313 ALAQASSEQAAAVEEVHGAIASMNQAIQQTGEHARRTNQIAVAAASDADKSGAAVQTTVD 372 Query: 360 AMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGSAQE 419 AMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAE+RKLAERSQ SA E Sbjct: 373 AMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEVRKLAERSQSSAHE 432 Query: 420 ISVIAEQSVELAEATSQRLAAGTLNGIREASQQINKITLSARLQEEGVQEIGSAVMQLND 479 ISVIA+QSVELAE TSQRL GTL GIR+ASQQIN+ITLS+R+QEEGV EIG AV QLND Sbjct: 433 ISVIAQQSVELAEQTSQRLVEGTLQGIRQASQQINQITLSSRMQEEGVAEIGVAVTQLND 492 Query: 480 TTQRNAAASEELATTAELVAERARELTAQLCYFRLDESRPAMP 522 TTQRNAAASEELA TAE +AERAREL AQL YFRL++S+ P Sbjct: 493 TTQRNAAASEELAITAEAMAERARELNAQLAYFRLEQSQQGQP 535 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 230 bits (586), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 148/344 (43%), Positives = 222/344 (64%), Gaps = 13/344 (3%) Query: 185 TRTSYEAALEDYRQLRTHNLQIAGLALAIGVAIA-LWIMISL-RRQLGGEPDYAAHIVHQ 242 T+ + A +DY +L + LA ++ V A LW+ + R Q+GGEP A ++ + Sbjct: 218 TQANVRQAGKDYAELEQKIFWL--LAASVVVLFACLWLSYRIIRSQIGGEPRDAMSVLRR 275 Query: 243 IAEGNLGVAVTLRRRDRSSLLYAMQGMRERLTDILRGVTLLTQALGDSARQLNATAQDLA 302 +AEG+L V V L + D+ S+LY+ Q M + TD++ V+ +L ++ Q+++++Q L+ Sbjct: 276 VAEGDLTVVVPLPKGDKLSVLYSTQQMINKWTDVIGDVSGTATSLASASEQISSSSQALS 335 Query: 303 SASNEQAAAVEEVHSAISNISLAIQQTGEHARRTDQIALNAAADADQSGAAVQSTVAAMR 362 + +QAA VEE +++ I+ I Q ++AR TD IA +A+ A + G AV+ TVAAM+ Sbjct: 336 HNAAQQAANVEETSASVEEITATIAQNADNARTTDGIASLSASAATEGGEAVRETVAAMK 395 Query: 363 GIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGSAQEISV 422 IA ++G+IDDIAYQTNLLALNAAIEAARAGEHG+GF+VVAAE+RKLAERSQ +AQEI Sbjct: 396 QIASKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQSAAQEIIA 455 Query: 423 IAEQSVELAEATSQRLAAGTLN----GIREASQQINKITLSARLQEEGVQEIGSAVMQLN 478 +AE SV LAE A G LN IR+ + + +I ++ Q G+++I +AV Q+ Sbjct: 456 VAETSVGLAEK-----AGGLLNQMVPSIRKTADLVQEIAAASHEQSTGLEQINNAVHQMA 510 Query: 479 DTTQRNAAASEELATTAELVAERARELTAQLCYFRLDESRPAMP 522 TTQ A+ASEEL+ T+E ++ +A L + +F++ E R P Sbjct: 511 QTTQMTASASEELSATSEEMSAQAIHLQDLMRFFQVGEPRKNAP 554 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 207 bits (527), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 220/368 (59%), Gaps = 15/368 (4%) Query: 174 LAALGQLQESFTRTSYEAALEDYRQLRTHNLQIAGLALAIGVAIALWIMISLRRQLGGEP 233 L LG+ ++ + AA YR + T + ++ + VA A I+ S+ QLGGEP Sbjct: 164 LDELGRFEDELNNQASAAADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEP 223 Query: 234 DYAAHIVHQIAEGNLGVAVTLRRRDRSSLLYAMQGMRERLTDILRGVTLLTQALGDSARQ 293 A + QIA+GNL V++ L + D+ SL+ +++ MR +LT I+ G+ +++ +A Q Sbjct: 224 AQAQELAAQIAQGNLAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQ 283 Query: 294 LNATAQDLASASNEQAAAVEEVHSAISNISLAIQQTGEHARRTDQIALNAAADADQSGAA 353 + DL+ + EQAA++EE S++ I+ ++Q ++A + Q+A +A+ A + G Sbjct: 284 IAVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEV 343 Query: 354 VQSTVAAMRGIARQ-------VGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEI 406 V+ V M+ I++ + ++ IA+QTN+LALNAA+EAARAGE GRGF+VVA E+ Sbjct: 344 VERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEV 403 Query: 407 RKLAERSQGSAQEISVIAEQSVELAEATSQRL---AAGTLNGIREASQQIN----KITLS 459 R LA+RS SA+EI + E SV+ EA Q+L A T++ + + QQ+N +IT + Sbjct: 404 RSLAQRSASSAKEIRGLIESSVQHVEA-GQKLVDEAGLTMDEVVRSIQQVNDLMSEITAA 462 Query: 460 ARLQEEGVQEIGSAVMQLNDTTQRNAAASEELATTAELVAERARELTAQLCYFRLDESRP 519 + Q G+ +I A+ Q+++ TQ+NAA EE A+ A+ +A++A L + FR+++ +P Sbjct: 463 SNEQSSGISQINIAISQMDEVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRIEQPQP 522 Query: 520 AMPPPASQ 527 A+ P Q Sbjct: 523 AVAYPREQ 530 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 206 bits (523), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 148/356 (41%), Positives = 211/356 (59%), Gaps = 15/356 (4%) Query: 175 AALGQLQESFTRT-SYEAALEDYRQLRTHNLQIAGLAL------AIGVAIAL----WIMI 223 AA+ +Q SF R SY AL D L +I G AL A GV + L W++ Sbjct: 158 AAIDTVQASFARHRSYNVALGDASALTAR--EIIGQALETVALVAGGVLLILLGAGWLLT 215 Query: 224 -SLRRQLGGEPDYAAHIVHQIAEGNLGVAVTLRRRDRSSLLYAMQGMRERLTDILRGVTL 282 +L RQ+GGEP ++ ++++G+L +TL+ R S+++A+Q M RL ++ V Sbjct: 216 RTLLRQMGGEPGDVVTVMQRLSDGDLVQTITLKPGCRDSMMHAIQKMMTRLAQVVGEVRG 275 Query: 283 LTQALGDSARQLNATAQDLASASNEQAAAVEEVHSAISNISLAIQQTGEHARRTDQIALN 342 L +A +++ATAQ L+ AS EQA VE+ A++ I +Q T ++AR TDQIA Sbjct: 276 NADGLVSTAEEVSATAQSLSRASTEQANGVEQTSEALAQIHALLQSTAQNARLTDQIAAA 335 Query: 343 AAADADQSGAAVQSTVAAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVV 402 AA +A Q V+ VAA++ IA ++ VIDDIAYQTNLLALNA IEAA AGEHG GF+VV Sbjct: 336 AALEARQCAETVKQMVAAIQQIAGKIAVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVV 395 Query: 403 AAEIRKLAERSQGSAQEISVIAEQSVELAEATSQRLAAGTLNGIREASQQINKITLSARL 462 AAE+R+LAERSQ +AQEI +A +V LA A ++L + + I S + I S+ Sbjct: 396 AAEVRRLAERSQSAAQEIDEVARANVTLACAAERQL-SDMVPTITRTSVLVQDIVQSSEQ 454 Query: 463 QEEGVQEIGSAVMQLNDTTQRNAAASEELATTAELVAERARELTAQLCYFRLDESR 518 Q V +I +A QL Q+N+ +SEELA T+E + RA L + +F+ +R Sbjct: 455 QSTAVSQISTAASQLAQVIQQNSLSSEELAVTSEELNRRALLLQTAVGFFQCQLAR 510 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 197 bits (500), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 207/357 (57%), Gaps = 13/357 (3%) Query: 172 TQLAALGQLQESFTRTSYEAALEDYRQLRTHNLQIAGLALAIGVAIALWIMISLRRQLGG 231 +L AL L++ + + EA+ Y + R L I+ + + V A W+ L R+LGG Sbjct: 165 VELKALAALEDQLNKEAAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGG 224 Query: 232 EPDYAAHIVHQIAEGNLGVAVTLRRRDRSSLLYAMQGMRERLTDILRGVTLLTQALGDSA 291 EPDYA I QIAEG+L V + R D SL+ AM+ MR++L I+ V ++ + ++ Sbjct: 225 EPDYAVQIAGQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTAS 284 Query: 292 RQLNATAQDLASASNEQAAAVEEVHSAISNISLAIQQTGEHARRTDQIALNAAADADQSG 351 ++ DL+ + +QA A+EE S++ ++ ++Q E+A + + +AL A+ A Q G Sbjct: 285 SEIARGNLDLSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGG 344 Query: 352 AAVQSTVAAMRGI-------ARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAA 404 + V V M+ I A V VID IA+QTN+LALNAA+EAARAGE GRGF+VVA+ Sbjct: 345 SIVSQVVQTMQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 404 Query: 405 EIRKLAERSQGSAQEISVIAEQSVELAEATSQRL--AAGTLN----GIREASQQINKITL 458 E+R LA+RS +A+EI V+ SV E S+ + A T++ IR + + +I Sbjct: 405 EVRSLAQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINH 464 Query: 459 SARLQEEGVQEIGSAVMQLNDTTQRNAAASEELATTAELVAERARELTAQLCYFRLD 515 + R Q G++++ A++Q++D TQ+NAA E+ A A + E+A L + FRLD Sbjct: 465 ANREQSSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLD 521 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.128 0.345 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,223,448 Number of extensions: 41703 Number of successful extensions: 544 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 71 Length of query: 528 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 438 Effective length of database: 1,193,720 Effective search space: 522849360 Effective search space used: 522849360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)