BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0057.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311936|ref|YP_003776028.1| phosphonoacetaldehyde phosphono...   447   e-127

>gi|300311936|ref|YP_003776028.1| phosphonoacetaldehyde
           phosphonohydrolase [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  447 bits (1150), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/265 (81%), Positives = 237/265 (89%)

Query: 11  LQAVIFDWAGTLVDFGSLAPTQIFVDAFESFGIALTLQQARGPMGLSKWQHIRLLLEEPS 70
           LQAVIFDWAGTLVDFGSLAPTQIFVDAFESF I ++L QARGPMGLSKWQHIRLLL+EP+
Sbjct: 13  LQAVIFDWAGTLVDFGSLAPTQIFVDAFESFDIEISLAQARGPMGLSKWQHIRLLLDEPA 72

Query: 71  LAAQWQQRTGHAPTEADIDAIYAHFMPMQIAKVGQYSQPIAGAAQVLAWLRGQGLKIGSC 130
           +AAQWQ RTG  P ++D+DA+Y  FMPMQIAKVGQYSQPI GAAQVLAWLRGQGLKIGSC
Sbjct: 73  IAAQWQARTGRPPADSDVDALYERFMPMQIAKVGQYSQPIDGAAQVLAWLRGQGLKIGSC 132

Query: 131 SGYPRQVLDVLLPMAAEEGLRPDHVVAGDELEAGGRPGPYMALANVLALQIDDVACCIKV 190
           SGYPRQVLDVLLP+AA  G+RPDHVVAGDEL AGGRPGPYMALANVLAL+IDDVA CIKV
Sbjct: 133 SGYPRQVLDVLLPLAAAAGIRPDHVVAGDELAAGGRPGPYMALANVLALRIDDVAACIKV 192

Query: 191 DDTVPGIEEGIRAGMWSVGLSLSGNEVGLTRAELDASPPEEIERLKTHAETRLHAAGAHY 250
           DDTVPGIEEG+RAGMWSVG+SL GNEVGLTR+ELD+ PP     L   A+ RL  AGAHY
Sbjct: 193 DDTVPGIEEGLRAGMWSVGVSLCGNEVGLTRSELDSLPPATASELNRQAQDRLRQAGAHY 252

Query: 251 VIDSVADLPQIVAHVRARLARGERP 275
           VID+VA LP++VAH+RARLARGERP
Sbjct: 253 VIDTVAGLPEVVAHIRARLARGERP 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,003,834
Number of extensions: 45690
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)