BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0052.p
         (598 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311937|ref|YP_003776029.1| poly(3-hydroxyalkanoate) synthe...  1103   0.0  
gi|300309607|ref|YP_003773699.1| poly(3-hydroxyalkanoate)synthet...    68   2e-12

>gi|300311937|ref|YP_003776029.1| poly(3-hydroxyalkanoate)
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 832

 Score = 1103 bits (2852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/582 (91%), Positives = 557/582 (95%), Gaps = 6/582 (1%)

Query: 10  HPPE-QPVTPAGAWGDVPNYVQDCVQRSFLFLDTLLDRGNDYLEHLEQGTPPLLKFGHEL 68
           HP + QPV  + +WGDVP Y+QDC+QRSFLFLDTLLDRGNDYLEHLEQGTPPLLKF HE+
Sbjct: 18  HPDDDQPVAASASWGDVPAYLQDCLQRSFLFLDTLLDRGNDYLEHLEQGTPPLLKFAHEV 77

Query: 69  VLDGHDLPQPCNYALLRLQPPPGLPVDPQARPVVVVDPRAGHGPGIGGFKFDSEVGMAMK 128
           VLDGHDLPQ CNYALLRLQPP GLPV+PQARPVVVVDPRAGHGPGIGGFKFDSEVGMAMK
Sbjct: 78  VLDGHDLPQACNYALLRLQPPAGLPVNPQARPVVVVDPRAGHGPGIGGFKFDSEVGMAMK 137

Query: 129 AGHTVYFVTFRPEPEEGQTLVTVMDAEARFLEEVIRRHPQCPAKPVVIGNCQAGWAMMTL 188
           AGHTVYFVTFRPEPE+GQTLVTVMDAEARFLEEVIRRHPQC AKPVVIGNCQAGWAMMTL
Sbjct: 138 AGHTVYFVTFRPEPEDGQTLVTVMDAEARFLEEVIRRHPQCSAKPVVIGNCQAGWAMMTL 197

Query: 189 DAVRSELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLASLAADLGADRFDGAYLV 248
           DAVR ELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLASLAADLGADRFDGAYLV
Sbjct: 198 DAVRPELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLASLAADLGADRFDGAYLV 257

Query: 249 ENFEKLNPANTFWSKYYNLWAGVDQEAARFLEFERWWGGFFRMTGAEIEAITENLFVGNK 308
           ENFEKLNPANTFW+KYYNLWAGVDQEAARFLEFERWWGGFFRMTGAEIEAITENLFVGNK
Sbjct: 258 ENFEKLNPANTFWNKYYNLWAGVDQEAARFLEFERWWGGFFRMTGAEIEAITENLFVGNK 317

Query: 309 LARGELEVKGRAVNLRDITAPIVVFASWGDNITPPPQALNWIIDVWGDERAIAAAGRTII 368
           LARGEL+V+G+ VNLR+I+APIVVFASWGDNITPPPQALNWIID WGDERAIAAAGRTII
Sbjct: 318 LARGELQVRGKPVNLREISAPIVVFASWGDNITPPPQALNWIIDTWGDERAIAAAGRTII 377

Query: 369 YVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEMKLERKDGRATQRWDALE 428
           YVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEMKLERKDGR TQRWD LE
Sbjct: 378 YVLHESVGHLGIFVGGSVALKEHDQLVSSLDVIESLPPGLYEMKLERKDGRPTQRWDVLE 437

Query: 429 PGDYTVHYEHRTMEDLRKLNPEGREEESLFSTISQWSQLNAQWYKTWVRPWVRMTATRDS 488
           PGDYTVHYEHRTMEDLRKLNPEGREEE++FSTISQWSQ+NAQ+YKTWVRPWVRMTATR+S
Sbjct: 438 PGDYTVHYEHRTMEDLRKLNPEGREEEAIFSTISQWSQMNAQFYKTWVRPWVRMTATRES 497

Query: 489 ANALMRMNPLRMQRQLFSDKHPAAAFIRQQAATARARILIGXRVQLDPEHPLKQYERRMA 548
           ANALMRMNPLRMQRQLFSD HPAAAFIRQQAA ARA      RVQLDP+HPLKQYE RMA
Sbjct: 498 ANALMRMNPLRMQRQLFSDAHPAAAFIRQQAAQARA-----QRVQLDPQHPLKQYEARMA 552

Query: 549 QKITDELNAWRDQRDARTVRVTRQLFGPTGLGAWLPPREPDA 590
           QKITDELNAWRDQRDARTVR+TRQ+FGP GLGAWLPPREPDA
Sbjct: 553 QKITDELNAWRDQRDARTVRMTRQMFGPNGLGAWLPPREPDA 594


>gi|300309607|ref|YP_003773699.1| poly(3-hydroxyalkanoate)synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 18/213 (8%)

Query: 175 VIGNCQAGWAMMTLDAVRSELFGPLMMVGAPASYWAGSSTLNPMRYSGANLGGTWLASLA 234
           ++G CQ GW    + A   E    L++ G+P    AG     P++     L   +   L 
Sbjct: 159 LVGLCQGGWISAMIAARFPEKVARLVLAGSPIDAGAGE---GPLKQMVQRLPLRFYEDLV 215

Query: 235 ADLGADRFDGAYLVENFEKLNPANTFWSKYYNLWAGVDQEA--ARFLEFERWWGGFFRMT 292
              G     G+++++ ++ ++P   +++++  L   +D  A  A+   F  W+     + 
Sbjct: 216 RS-GGGLMRGSFMLQGWKNMHPDEHYFNEHLELLQHIDDPAYLAKRETFAAWYETTVDLP 274

Query: 293 GAEIEAITENLFVGNKLARGELEVKGRAVNLRDITAPIVVFASWGDNITPPPQALNWIID 352
           G        ++F  N LARG+    G+ ++LR IT P+ + A   D+IT P Q LN    
Sbjct: 275 GRWYLQAIGHIFKDNLLARGKYVALGQQLDLRQITCPLYLLAGERDDITTPEQVLN---- 330

Query: 353 VWGDERAIAAAGRTIIYVLHESV--GHLGIFVG 383
                 A A  G     +  + V  GH+G+F+G
Sbjct: 331 ------AAALVGTPAAQITQKIVPGGHIGLFMG 357


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,105,349
Number of extensions: 96645
Number of successful extensions: 242
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 2
Length of query: 598
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 507
Effective length of database: 1,188,985
Effective search space: 602815395
Effective search space used: 602815395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)