BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0047.p (229 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC t... 457 e-130 gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 215 2e-57 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 185 3e-48 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 178 3e-46 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 171 7e-44 >gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 229 Score = 457 bits (1176), Expect = e-130, Method: Compositional matrix adjust. Identities = 226/229 (98%), Positives = 228/229 (99%) Query: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI Sbjct: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 Query: 61 DGVELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPASAKGKVPDELYSLFPVL 120 DGVELG LESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPA+AKGKVPDELYSLFPVL Sbjct: 61 DGVELGSLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPAAAKGKVPDELYSLFPVL 120 Query: 121 YDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIAKSLKEIRKIR 180 YDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIA+SLKEIRKIR Sbjct: 121 YDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIRKIR 180 Query: 181 ALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDAPTISKYLSV 229 ALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDAPTISKYLSV Sbjct: 181 ALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDAPTISKYLSV 229 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 215 bits (548), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 107/233 (45%), Positives = 161/233 (69%), Gaps = 5/233 (2%) Query: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 M +V++L YG + + V L V K ++++++GRNG+GKTTL K LMG+LP+ G++ Sbjct: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 Query: 61 DGVELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPASAKGK----VPDELYSL 116 +G ++ L+ HQR + G+AYVPQGR IF+ +TV EN+ G+ A+ G+ + E+Y L Sbjct: 61 EGHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGM-ATLSGRRASSIKGEVYEL 119 Query: 117 FPVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIAKSLKEI 176 FPVL +M R+GG+LSGGQQQQLAIARAL P++++LDEPTEGIQPSIIKDI + + + Sbjct: 120 FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLL 179 Query: 177 RKIRALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDAPTISKYLSV 229 R+ + I++ EQ F E+AD F+V+ +G V T++ +D + K+L+V Sbjct: 180 RQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 185 bits (469), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 143/223 (64%), Gaps = 5/223 (2%) Query: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 + V+ L +GYG S+V+H VDL+V + EIV+++GRNG G++TL K LMG+LP RG Sbjct: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSRG-DCRF 65 Query: 61 DGVELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGL---PASAKGKVPDELYSLF 117 +G ++ GL +H G+ YVP+ R +F ++V +N+ G P +G D++++LF Sbjct: 66 EGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDDIHALF 125 Query: 118 PVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIAKSLKEIR 177 P LY R LSGG+QQ LA+ RAL NP +LL+DEPTEG+ P +++ +A++L+E+R Sbjct: 126 PALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELR 185 Query: 178 KIRALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDA 220 R + +++ EQ + LE++ R V+ +G V+E T + A Sbjct: 186 -TRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSA 227 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 178 bits (452), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 136/223 (60%), Gaps = 4/223 (1%) Query: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 + +V L Y + ++ +DL + E+VA+MGRNG GK+T K LMG+L R G I + Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRL 64 Query: 61 DGVELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPASAKGK---VPDELYSLF 117 G ++G L HQR G+ YVP+ R IF+ ++VLEN++TG G P L+ LF Sbjct: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALFELF 124 Query: 118 PVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIAKSLKEIR 177 P L M R GG +SGG+QQ L IAR L NPR+LLLDEP+EG+ P I++ +A ++E++ Sbjct: 125 PNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELK 184 Query: 178 KIRALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDA 220 + + I++ EQ L F + DR ++D+GR V T ++ A Sbjct: 185 R-SGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQA 226 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 171 bits (432), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 93/235 (39%), Positives = 146/235 (62%), Gaps = 9/235 (3%) Query: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 + ++S L S YG+S ++H+V+L+V + E+V ++GRNG G+TT +++MG++ R GSI I Sbjct: 11 VLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKI 70 Query: 61 DGVELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLP----ASAKGKVPDELYSL 116 +G E L +H+ GV Y P+ R IFS ++ EN+ LP + KG DE+Y + Sbjct: 71 NGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLM--LPPFVSKTDKGMSIDEIYEM 128 Query: 117 FPVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIAKSLKEI 176 FP L + R +G LSGG+QQ LA+AR L T R+LLLDE +EG+ P I++ +A+ + + Sbjct: 129 FPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTL 188 Query: 177 RKIRALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDAP--TISKYLSV 229 K + TIV+ EQ F +ADRF V++ G+ V ++A T+++ L V Sbjct: 189 -KAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 599,935 Number of extensions: 22070 Number of successful extensions: 425 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 136 Length of query: 229 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 147 Effective length of database: 1,231,600 Effective search space: 181045200 Effective search space used: 181045200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)