BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0046.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC t... 519 e-149 gi|300313998|ref|YP_003778090.1| urea transport system, ATPase c... 266 1e-72 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 167 8e-43 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 163 1e-41 gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 153 1e-38 >gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 519 bits (1337), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/255 (99%), Positives = 255/255 (100%) Query: 1 MSENAIGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDL 60 MSENAIGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDL Sbjct: 1 MSENAIGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDL 60 Query: 61 ICGKTRATSGSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRK 120 ICGKTRATSGSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRK Sbjct: 61 ICGKTRATSGSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRK 120 Query: 121 VFGALTFKRSPDVVARVEAVAAEIFLDQQLHTQADLLSHGQKQWLEIGMLLMQEPELLML 180 VFGALTFKRSPDVVARVEAVAAEIFL++QLHTQADLLSHGQKQWLEIGMLLMQEPELLML Sbjct: 121 VFGALTFKRSPDVVARVEAVAAEIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLML 180 Query: 181 DEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSME 240 DEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSME Sbjct: 181 DEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSME 240 Query: 241 KVQSDPKVIDVYLGH 255 KVQSDPKVIDVYLGH Sbjct: 241 KVQSDPKVIDVYLGH 255 >gi|300313998|ref|YP_003778090.1| urea transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 289 Score = 266 bits (679), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 133/251 (52%), Positives = 183/251 (72%), Gaps = 3/251 (1%) Query: 7 GFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTR 66 G ++ +L +E++TVSFDGFKA++ LNL + E+R +IGPNGAGKTT++D+I GKTR Sbjct: 38 GVDTTHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTR 97 Query: 67 ATSGSIKFNNH-ELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVFGAL 125 TSG+ F +LTKM+E+ I G+GRKFQ P+++E +VFENLE++ ++V L Sbjct: 98 PTSGTAFFGQTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTL 157 Query: 126 TFKRSPDVVARVEAVAAEIFLDQQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVA 185 + S + + ++E + I L+ Q A LLSHGQKQWLEIGMLLMQEP+LL+LDEPVA Sbjct: 158 FARLSSEQIGKIEEILKLIRLNGQEQRVAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPVA 217 Query: 186 GMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAH--KVTVLHQGKILAEGSMEKVQ 243 GMS +E +TAELL + S++V+EHDM FV+ IA KVTVLH+G +LAEG+M +VQ Sbjct: 218 GMSDAETARTAELLNELRGKHSIMVVEHDMGFVEEIAQGGKVTVLHEGSVLAEGNMRQVQ 277 Query: 244 SDPKVIDVYLG 254 S+ +VI+VYLG Sbjct: 278 SNERVIEVYLG 288 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 167 bits (423), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 146/244 (59%), Gaps = 6/244 (2%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATSGSIKF 74 +L +LT F GF AV +NL ++R + +IGPNGAGKTT +L+ TSG I F Sbjct: 5 ILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQILF 64 Query: 75 NNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVFGALTFKRSPDVV 134 N ++T + I R G+ R FQ +++ ++SV EN+ + R K+ + F ++ + + Sbjct: 65 NGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQR--KLGTSFHFWKNGESL 122 Query: 135 ARVEAVAAEIFLDQQL----HTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVAGMSVS 190 +++ A ++ + L HT L +G+K+ LEI L EPEL++LDEP GM Sbjct: 123 KQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHE 182 Query: 191 EREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMEKVQSDPKVID 250 + ++ L+ ++S GR+++++EH+M + I +++VL +G +LAEGS E+V +P+V++ Sbjct: 183 DVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVME 242 Query: 251 VYLG 254 Y+G Sbjct: 243 AYMG 246 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 163 bits (413), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 155/248 (62%), Gaps = 8/248 (3%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATSGSIKF 74 +L + D++ +F G + + +N V++ E+ +IGPNGAGKTTV +LI G RA+SGSI+F Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 75 NNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENL------EMSFPRGRKVFGALTFK 128 N+ ++ ++ H I G+ R FQ +++ +++ EN+ +++ + F+ Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 129 RS-PDVVARVEAVAAEIFLDQQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVAGM 187 + + R + + + LD + H AD LS+G+++ LE L +P+LL+LDEPVAGM Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 Query: 188 SVSER-EKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMEKVQSDP 246 + +E+ E +E++ +G ++ +IEHDM FV + ++ VL+ GKI+AEG+ ++++++ Sbjct: 182 NPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 Query: 247 KVIDVYLG 254 +VI+ YLG Sbjct: 242 EVIEAYLG 249 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 153 bits (387), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 141/247 (57%), Gaps = 5/247 (2%) Query: 12 AHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATSGS 71 + P+L ++T + F AV+ + L ++ V VIGPNGAGKTT+ + G T T GS Sbjct: 2 SRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGS 61 Query: 72 IKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVFGALTFKRSP 131 I E+ + + V+ G+ R FQ S++ NLSV ENL ++ +GR AL + Sbjct: 62 ILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLA-AQGRAPLAALNPWKRA 120 Query: 132 DVVARVEAVAAEIFLDQQLHTQADL----LSHGQKQWLEIGMLLMQEPELLMLDEPVAGM 187 + + A+A E+ L A LSHGQ++ LE+GM + P+++ LDEP +GM Sbjct: 121 EQFSAACALADELLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 Query: 188 SVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMEKVQSDPK 247 + + + +L+ + + +VV+IEH+MD V I+ ++TV+ G+ILA+G +++SD + Sbjct: 181 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 Query: 248 VIDVYLG 254 V YLG Sbjct: 241 VRRAYLG 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 656,815 Number of extensions: 22610 Number of successful extensions: 368 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 262 Number of HSP's successfully gapped: 127 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)