BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0036.p (561 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 389 e-109 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 368 e-103 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 367 e-102 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 365 e-102 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 350 2e-97 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 389 bits (999), Expect = e-109, Method: Compositional matrix adjust. Identities = 220/333 (66%), Positives = 258/333 (77%), Gaps = 1/333 (0%) Query: 205 LWLVRNLLLQLGGEPAYAAAVAKAIAEGNLATEVRIKETDRASLLFAMRNMRDSLAGIVG 264 + L R LL QLGGEP YAA +A+ IA+G+L V+ K D +SLLFA++NMRDSL IV Sbjct: 204 VLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLVSIVA 263 Query: 265 DVRGGVTTIAKASSEIANGNLDLSSRTEQQASSLEETTSAMLQLAAAVRQNADNAQQGNQ 324 VR G TI +ASSEIA+GNLDLSSRTEQQASSLEET SAM +L V+QNADNA+Q +Q Sbjct: 264 QVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADNAKQASQ 323 Query: 325 LAVSASTVAAQGGAVVNKVVATMEAINDSSLKIVDIISVIDGIAFQTNILALNAAVEAAR 384 LAVSAS VA+QGG VV +VV TM+ IN SS KIVDIISVIDGIAFQTNILALNAAVEAAR Sbjct: 324 LAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNAAVEAAR 383 Query: 385 AGEQGRGFAVVASEVRALAQRSAAAAKEIKLLIDDSVSSVGEGSRLVAEAGKTMAEVVRS 444 AGEQGRGFAVVASEVR+LAQRSA AAKEI LI+DSVS + GS LV +AG+TM VV S Sbjct: 384 AGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTMENVVNS 443 Query: 445 VRRVTDVIGEISAASLEQSAGIEQVKQAITQMDDATQQNAALVEEATAASQSLRDQSVQL 504 V+RVTDV+ EIS AS EQS GI QV AIT MD+ATQQN+ALVEEA AA+ S+++Q+ L Sbjct: 444 VKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMKEQAGAL 503 Query: 505 EQAVSLFKLK-QERNPSPHVKTSAPAPSPAAAG 536 V+ F+L Q+ S + + SAPA + G Sbjct: 504 SGLVATFRLDAQQARQSGYSQASAPAHAHHVTG 536 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 368 bits (945), Expect = e-103, Method: Compositional matrix adjust. Identities = 218/373 (58%), Positives = 267/373 (71%), Gaps = 8/373 (2%) Query: 145 NRAEVKDNADKTFSTLGDLKQKQALAAQHKVEFQQNEAASTRQFSFGATLAVALLVLTGG 204 N V D +K + L +K + A H+ Q A+ R + + AV +V G Sbjct: 148 NNQPVIDRLNKAMTELRAYNEKISQAGAHRA---QETMAAARLHAILISAAVIAVVTLMG 204 Query: 205 LWLVRNLLLQLGGEPAYAAAVAKAIAEGNLATEVRIKETDR-ASLLFAMRNMRDSLAGIV 263 L + R + L A A +A+ IAEG+L E+ TD L+ AM M +L IV Sbjct: 205 LLIARKIARSL----AEAVELAETIAEGDLTREIDTSSTDEIGHLMAAMAKMNRNLVTIV 260 Query: 264 GDVRGGVTTIAKASSEIANGNLDLSSRTEQQASSLEETTSAMLQLAAAVRQNADNAQQGN 323 VR GV T+A ASS+IA GN+DLS+RTEQQASSLE+T +A +L + V+QNA+NA Q + Sbjct: 261 ATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAATEELTSTVKQNAENALQAD 320 Query: 324 QLAVSASTVAAQGGAVVNKVVATMEAINDSSLKIVDIISVIDGIAFQTNILALNAAVEAA 383 QLA +AS +AA+GG VV +VV TME I SSL I DIISVIDGIAFQTNILALNAAVEAA Sbjct: 321 QLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVIDGIAFQTNILALNAAVEAA 380 Query: 384 RAGEQGRGFAVVASEVRALAQRSAAAAKEIKLLIDDSVSSVGEGSRLVAEAGKTMAEVVR 443 RAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LIDDSVS V GS+LV AG TM +VV Sbjct: 381 RAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVSKVENGSQLVMSAGNTMQQVVE 440 Query: 444 SVRRVTDVIGEISAASLEQSAGIEQVKQAITQMDDATQQNAALVEEATAASQSLRDQSVQ 503 SVRRVTDV+ EISAAS EQS GIEQV QAI+ MD +TQ+NAALVEEATAA+QSL++Q+ Q Sbjct: 441 SVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSLQEQARQ 500 Query: 504 LEQAVSLFKLKQE 516 LE+AV++FKL+QE Sbjct: 501 LERAVNVFKLRQE 513 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/309 (65%), Positives = 248/309 (80%) Query: 205 LWLVRNLLLQLGGEPAYAAAVAKAIAEGNLATEVRIKETDRASLLFAMRNMRDSLAGIVG 264 WL R+LL +LGGEP YA +A IAEG+LA + + D SL+ AMR MRD LA IV Sbjct: 212 FWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVA 271 Query: 265 DVRGGVTTIAKASSEIANGNLDLSSRTEQQASSLEETTSAMLQLAAAVRQNADNAQQGNQ 324 +VR G TI ASSEIA GNLDLS RTEQQA +LEET S+M QL + V+QNA+NA Q N Sbjct: 272 EVRKGSETITTASSEIARGNLDLSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQAND 331 Query: 325 LAVSASTVAAQGGAVVNKVVATMEAINDSSLKIVDIISVIDGIAFQTNILALNAAVEAAR 384 LA++AS VA QGG++V++VV TM++IN SS K+ DI+SVIDGIAFQTNILALNAAVEAAR Sbjct: 332 LALAASDVAVQGGSIVSQVVQTMQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAAR 391 Query: 385 AGEQGRGFAVVASEVRALAQRSAAAAKEIKLLIDDSVSSVGEGSRLVAEAGKTMAEVVRS 444 AGEQGRGFAVVASEVR+LAQRSA+AAKEIK+LI DSV V GS+LV +AG TM ++V S Sbjct: 392 AGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTS 451 Query: 445 VRRVTDVIGEISAASLEQSAGIEQVKQAITQMDDATQQNAALVEEATAASQSLRDQSVQL 504 +RRVTDV+ EI+ A+ EQS+GIEQV +AI Q+DD TQQNAALVE+A AA++SL++Q+ L Sbjct: 452 IRRVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGL 511 Query: 505 EQAVSLFKL 513 +Q VS+F+L Sbjct: 512 QQLVSVFRL 520 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 365 bits (937), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/317 (67%), Positives = 247/317 (77%) Query: 205 LWLVRNLLLQLGGEPAYAAAVAKAIAEGNLATEVRIKETDRASLLFAMRNMRDSLAGIVG 264 + R+LL QLGGEPAYAA +A+ IA G+L +V K D SLLFA++ MRD+LA IVG Sbjct: 214 FVITRSLLKQLGGEPAYAADIAQQIASGDLTADVDAKPGDTTSLLFAIKKMRDNLAAIVG 273 Query: 265 DVRGGVTTIAKASSEIANGNLDLSSRTEQQASSLEETTSAMLQLAAAVRQNADNAQQGNQ 324 VR G I +AS+EIA GN+DLSSRTEQQA +LEET SAM +L + V+QNADNA+Q +Q Sbjct: 274 KVREGTHAIEQASAEIATGNMDLSSRTEQQAGALEETASAMEELMSTVKQNADNARQASQ 333 Query: 325 LAVSASTVAAQGGAVVNKVVATMEAINDSSLKIVDIISVIDGIAFQTNILALNAAVEAAR 384 LAVSAS VA+QGG VV +VV+TME IN SS KIVDIISVIDGIAFQTNILALNAAVEAAR Sbjct: 334 LAVSASDVASQGGQVVGQVVSTMEGINASSRKIVDIISVIDGIAFQTNILALNAAVEAAR 393 Query: 385 AGEQGRGFAVVASEVRALAQRSAAAAKEIKLLIDDSVSSVGEGSRLVAEAGKTMAEVVRS 444 AGEQGRGFAVVASEVR+LAQRSA AAKEI LI+DSV + +GS LV +AG TM VV S Sbjct: 394 AGEQGRGFAVVASEVRSLAQRSATAAKEITDLINDSVGQIEQGSSLVGQAGATMENVVTS 453 Query: 445 VRRVTDVIGEISAASLEQSAGIEQVKQAITQMDDATQQNAALVEEATAASQSLRDQSVQL 504 V+RVTDV+ EIS AS EQS GI QV AIT MD+ATQQN+ALVEEA AA+ S++ Q+ QL Sbjct: 454 VKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEATQQNSALVEEAAAAANSMKTQAEQL 513 Query: 505 EQAVSLFKLKQERNPSP 521 VS FKL P P Sbjct: 514 AGLVSTFKLAHSPAPGP 530 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 350 bits (898), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 187/275 (68%), Positives = 220/275 (80%) Query: 209 RNLLLQLGGEPAYAAAVAKAIAEGNLATEVRIKETDRASLLFAMRNMRDSLAGIVGDVRG 268 +L +GG+PA AA VA IA+G+L + D +SLL+A+R+MRDSL + +++ Sbjct: 210 HGILRTIGGDPAQAAEVANRIAQGDLTPNIETAPGDSSSLLYAVRSMRDSLLSTITNIKA 269 Query: 269 GVTTIAKASSEIANGNLDLSSRTEQQASSLEETTSAMLQLAAAVRQNADNAQQGNQLAVS 328 TIA AS EIA+GNLDLS RTEQQA S+EET SAM +L A V+QNADNA+Q NQLA S Sbjct: 270 SAGTIASASQEIASGNLDLSGRTEQQAGSIEETASAMEELTATVKQNADNARQANQLAES 329 Query: 329 ASTVAAQGGAVVNKVVATMEAINDSSLKIVDIISVIDGIAFQTNILALNAAVEAARAGEQ 388 AS VA QGG+VV++VV TME I DSS KI DII VIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 330 ASEVAIQGGSVVSQVVQTMEGITDSSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQ 389 Query: 389 GRGFAVVASEVRALAQRSAAAAKEIKLLIDDSVSSVGEGSRLVAEAGKTMAEVVRSVRRV 448 GRGFAVVASEVR+LAQRSA+AAKEIK LIDDSV+ V GS+LV +AG TM EVV SVRRV Sbjct: 390 GRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDTGSKLVEQAGATMTEVVASVRRV 449 Query: 449 TDVIGEISAASLEQSAGIEQVKQAITQMDDATQQN 483 TD++GEIS+AS EQSAGI +V +AITQMD+ TQQN Sbjct: 450 TDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQN 484 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,226,118 Number of extensions: 40468 Number of successful extensions: 525 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 70 Length of query: 561 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 471 Effective length of database: 1,193,720 Effective search space: 562242120 Effective search space used: 562242120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)