BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0031.p
         (489 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311953|ref|YP_003776045.1| cobyric acid synthase [Herbaspi...   905   0.0  

>gi|300311953|ref|YP_003776045.1| cobyric acid synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 489

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/486 (93%), Positives = 463/486 (95%)

Query: 1   VAEFPFHTLMIQGTTSDAGKSTLAAALCRLLKKDGIGVAPFKPQNMALNSAVTSDGGEIG 60
           +AEFPFHTLMIQGTTSDAGKSTLAAALCRLLKKDG+ VAPFKPQNMALNSAVTSDGGEIG
Sbjct: 1   MAEFPFHTLMIQGTTSDAGKSTLAAALCRLLKKDGVSVAPFKPQNMALNSAVTSDGGEIG 60

Query: 61  RAQALQAQAAGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYHRYKTEAMQAVL 120
           RAQALQAQAAGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYHRYKTEAMQAVL
Sbjct: 61  RAQALQAQAAGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYHRYKTEAMQAVL 120

Query: 121 QSYERLRTQYACVIVEGAGSPAEINLRARDIANMGFAEAVDCPVIIVADIDRGGVFAHLT 180
           QSY RLR QYACVIVEGAGSPAEINLRARDIANMGFAEAVDCPVIIVADIDRGGVFAHLT
Sbjct: 121 QSYARLRAQYACVIVEGAGSPAEINLRARDIANMGFAEAVDCPVIIVADIDRGGVFAHLT 180

Query: 181 GTLDCLSESERERVIGFVINRFRGDISLLQGGLDWLEARTGKPVLAVLPYLHGLHLDAED 240
           GTLDCLSESER RVIGFVINRFRGDISLLQ GLDWLE RTGKPVLAVLPYLHGLHLDAED
Sbjct: 181 GTLDCLSESERARVIGFVINRFRGDISLLQAGLDWLEQRTGKPVLAVLPYLHGLHLDAED 240

Query: 241 AVAATQESKGDFRIVVPVFPRISNHTDFDALRAHPGVDLRFIGPGQPVPPADLIILPGSK 300
           AVAATQE KGDFRIVVPVFPRISNHTDFDALRAHPGVDLRFIGPGQPVPPADLIILPGSK
Sbjct: 241 AVAATQEVKGDFRIVVPVFPRISNHTDFDALRAHPGVDLRFIGPGQPVPPADLIILPGSK 300

Query: 301 NTRGDLRWLREHGWDTAIARHLRYGGKLIGICGGFQMLGESVDDPHGVEGAPGSSAGLGL 360
           NTRGDLRWLREHGW+ AIARHLRYGGK+IGICGGFQMLGESVDDPHGVEGAPGSSAGLGL
Sbjct: 301 NTRGDLRWLREHGWEAAIARHLRYGGKVIGICGGFQMLGESVDDPHGVEGAPGSSAGLGL 360

Query: 361 LPMRTELTREKKLLQVVGQCAFAETAASVSGYEIHMGVSSGPALGRPAFVIDGRGEGAQS 420
           L MRTELTR+K+LLQV G CA  + +A V GYEIHMGVSSG AL RPAFVI+GRGEGAQS
Sbjct: 361 LAMRTELTRDKRLLQVSGHCAVGDRSAPVRGYEIHMGVSSGAALARPAFVIEGRGEGAQS 420

Query: 421 EDGQILGSYLHGMFDTPQAFGALLAWAGLAGTEPVDLDALREASLERLAESCRPLYDALQ 480
            DGQILGSYLHGMFDTPQA GALL WAGLAG EPVDLDALRE SLERLAESCRPLY+ALQ
Sbjct: 421 ADGQILGSYLHGMFDTPQALGALLDWAGLAGAEPVDLDALREVSLERLAESCRPLYEALQ 480

Query: 481 RVPTRF 486
           R+PTRF
Sbjct: 481 RLPTRF 486


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,541,534
Number of extensions: 66140
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 400
Effective length of database: 1,198,455
Effective search space: 479382000
Effective search space used: 479382000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)