BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0030.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311954|ref|YP_003776046.1| cobalamin biosynthesis protein ...   406   e-114
gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotrans...    63   3e-11
gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotrans...    57   2e-09
gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic ami...    55   7e-09

>gi|300311954|ref|YP_003776046.1| cobalamin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/269 (78%), Positives = 232/269 (86%)

Query: 27  LAVAGTQAAIQALPQLRLQQQGRPAQVVVAAPIYAEHAHCWRRAGHAVREVPYDDLDEAV 86
           LAVAGTQAAIQALPQLRL++ GRPAQVVVAAPIYAEHAHCWRR GH V EVPY+ LD+AV
Sbjct: 68  LAVAGTQAAIQALPQLRLRRDGRPAQVVVAAPIYAEHAHCWRRCGHEVSEVPYEALDQAV 127

Query: 87  RESRCEVLVLCNPNNPTGAMVAPEDVLRWAALLAARGGWLVVDEAFGDTVQGRSVAAHSD 146
           +   C+VLVLCNPNNPTGA+V PE +LRWAA LA RGGWLVVDEAFGDT+   SVAAH+ 
Sbjct: 128 QSPSCQVLVLCNPNNPTGALVEPERLLRWAAQLAERGGWLVVDEAFGDTLTHYSVAAHTP 187

Query: 147 QPGLIVLRSVGKFFGLAGLRLGFVGAAPAVLEALADWLGPWSISGPAQQIGSAALCDRPW 206
           Q GLIVLRSVGKFFGLAGLRLGFV AAPA+L  LADWLGPW+ISGPAQQIG AAL DR W
Sbjct: 188 QTGLIVLRSVGKFFGLAGLRLGFVAAAPALLAELADWLGPWTISGPAQQIGCAALRDRDW 247

Query: 207 QAATLQTLLAEGERLHALLAQHGIRAGGTALFQWWPEPRAQAFHEAMARAGIWVRLFTRG 266
           QA T Q L A+G+RL  LLA+HGI A GTALFQWWPEP+AQAFH  MA AG+WVRLFTRG
Sbjct: 248 QAQTRQRLQAQGQRLQQLLARHGIAAQGTALFQWWPEPQAQAFHACMAEAGVWVRLFTRG 307

Query: 267 AGGIRLGLPPDEAGWSRLQDALNTWSQRG 295
           AGGIR+GLPPD+AGW RL +AL TWSQRG
Sbjct: 308 AGGIRIGLPPDDAGWQRLHEALTTWSQRG 336


>gi|300313353|ref|YP_003777445.1| histidinol-phosphate
           aminotransferase 1 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 372

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 99  PNNPTGAMVAPEDVLRWAALLAARGGWLVVDEAFGDTVQGRSVAAHSDQPGLIVLRSVGK 158
           PNNPTG +    DVLR     AA  G +VVDEA+        + A      L+++R+V K
Sbjct: 173 PNNPTGTLYEMADVLRIVEA-AAPYGLVVVDEAYQPFAASTLMPALPQHNNLVLMRTVSK 231

Query: 159 FFGLAGLRLGFVGAAPAVLEALADWLGPWSIS 190
             GLAG+RLG++ AAPA+L  L     P++++
Sbjct: 232 L-GLAGIRLGYLSAAPALLRELDKVRPPYNVN 262


>gi|300313983|ref|YP_003778075.1| histidinol-phosphate
           aminotransferase 1 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 360

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 10/193 (5%)

Query: 94  LVLCNPNNPTGAMVAPEDVLRWAALLAARGGWLVVDEAFGDTVQGRSVAAHSDQPGLIVL 153
           ++  NPN PTG ++   DV R   L       +VVDEA+ D     ++      P L+V+
Sbjct: 154 IIFPNPNAPTGCLLGLADVERI--LQGNPERVVVVDEAYIDFGGQSAIPLVQRYPNLLVV 211

Query: 154 RSVGKFFGLAGLRLGF-VGAAPAV--LEALADWLGPWSISGPAQQIGSAALCDRPWQAAT 210
           +++ K   LAG+R+GF VG A  +  LE + +    + +  PA    +AA+ D  +   T
Sbjct: 212 QTLSKSRALAGMRVGFAVGHADLIDALERVKNSFNSYPLDRPAIAGATAAIEDEDYFRKT 271

Query: 211 LQTLLAEGERLHALLAQHGIR---AGGTALFQWWPEPRAQAFHEAMARAGIWVRLFT--R 265
              ++A    L A LA  G +   +    LF   P+  A     A+   GI VR F   R
Sbjct: 272 CNMVIASRTALAAQLAGLGFQVLPSAANFLFVRHPQHDAAQLAAALRADGIIVRHFKSER 331

Query: 266 GAGGIRLGLPPDE 278
            +  +R+ +  DE
Sbjct: 332 ISQFLRITIGTDE 344


>gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 1/128 (0%)

Query: 94  LVLCNPNNPTGAMVAPEDVLRWAALLAARGGWLVVDEAF-GDTVQGRSVAAHSDQPGLIV 152
           ++L +P+NPTG  + P+++      +  RGG+ +VDE + G + +G   +A S    ++V
Sbjct: 170 VLLASPSNPTGTSILPDELRAIVGEVRQRGGFTIVDEIYQGLSYEGAPFSALSLGDDVVV 229

Query: 153 LRSVGKFFGLAGLRLGFVGAAPAVLEALADWLGPWSISGPAQQIGSAALCDRPWQAATLQ 212
           + S  K+F + G RLG++   PA++  +        I   +    +A  C  P   A  +
Sbjct: 230 INSFSKYFNMTGWRLGWLVLPPALVPQVEKLAQNLLICASSIAQHAAVACFTPQTLALYE 289

Query: 213 TLLAEGER 220
              AE +R
Sbjct: 290 ERKAEFKR 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 907,781
Number of extensions: 36805
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 4
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)