BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0028.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311956|ref|YP_003776048.1| bifunctional cobinamide kinase/...   282   1e-77

>gi|300311956|ref|YP_003776048.1| bifunctional cobinamide
           kinase/cobinamide phosphate guanylyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  282 bits (721), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/198 (78%), Positives = 170/198 (85%), Gaps = 3/198 (1%)

Query: 9   HRSLIFGGARSGKSAHAERLALAAAQSGPQ---EIVYLATANRAASRDDAEMQERIAHHQ 65
            RSLIFGGARSGKSAHAERLALAA  S  Q   EI+YLATA+R+AS DDAEMQ+RI  HQ
Sbjct: 7   RRSLIFGGARSGKSAHAERLALAALASQAQAGGEILYLATASRSASGDDAEMQQRIDQHQ 66

Query: 66  QRRRALGGHWSTVEEPLALGQALRSLSRPESVVLVDCLTVWLANLLFAEGVDYPEVGPIT 125
           QRR  LGG W TVEEPLALG ALR+ ++P  VVLVDCLTVWLANLLFA+G+++P+ GPI 
Sbjct: 67  QRRSELGGRWRTVEEPLALGAALRTHAQPGQVVLVDCLTVWLANLLFADGIEFPDAGPIV 126

Query: 126 PPLAFTQQRVDFLRALQEVQGTVILVSNEVGMGIVPQGAISRWFVDEAGRLNQAVAALCE 185
           PP AFT+QR DFL ALQEV+G VILVSNEVGMGIVPQGAISRWFVDEAGRLNQAVAA CE
Sbjct: 127 PPPAFTRQREDFLLALQEVRGEVILVSNEVGMGIVPQGAISRWFVDEAGRLNQAVAAQCE 186

Query: 186 RVQWVAAGLPLTFKDHPC 203
           RVQWVAAGLPL+ KD PC
Sbjct: 187 RVQWVAAGLPLSLKDLPC 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 640,669
Number of extensions: 24648
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)