BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0023.p
         (521 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311961|ref|YP_003776053.1| bifunctional precorrin-3 methyl...   968   0.0  

>gi|300311961|ref|YP_003776053.1| bifunctional precorrin-3
           methyltransferase/precorrin-6x reductase oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 519

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/519 (90%), Positives = 491/519 (94%)

Query: 3   MEVVKKKGVLNLVSVGPGFEEMIIPRAIEALRDSEVIVAYELYLRWIASHIEGKEIHTPP 62
           ME VKKKGVLNLVSVGPGFEEMIIPRAIEALR+SEVIVAYELYLRWIA+HIEGKEIHTPP
Sbjct: 1   MEAVKKKGVLNLVSVGPGFEEMIIPRAIEALRESEVIVAYELYLRWIAAHIEGKEIHTPP 60

Query: 63  LTQERERALLAIEQARAGRRVALISSGDIGIYAMAALAFDDMREDDTYEVNVIPGVTSAN 122
           LTQERERALLAIEQARAGRRVALISSGDIGIYAMAALAFDDMREDDTYEVNVIPGVTSAN
Sbjct: 61  LTQERERALLAIEQARAGRRVALISSGDIGIYAMAALAFDDMREDDTYEVNVIPGVTSAN 120

Query: 123 ACASLLGSPLSHDFATLSLSNLLCPWSWIEQRASHIAQADLACVLYNVQSAGRQEGVYRI 182
           ACASLLGSPLSHDFATLSLSNLLCPW+WIEQRASHIAQADLACVLYNVQSAGRQEGVYRI
Sbjct: 121 ACASLLGSPLSHDFATLSLSNLLCPWTWIEQRASHIAQADLACVLYNVQSAGRQEGVYRI 180

Query: 183 LQLMLQHKAPHTLCGVVRNAYRPGQQVSIHRLDELPGLQFDMLTSIVIGNRFTQRKRDWI 242
           LQLMLQHKAPHTLCGVVRNAYRPGQ+V+IHRLDELPGLQFDMLTSIVIGNRFTQRKRDWI
Sbjct: 181 LQLMLQHKAPHTLCGVVRNAYRPGQKVTIHRLDELPGLQFDMLTSIVIGNRFTQRKRDWI 240

Query: 243 FTPRGYNDWSEESQAAEVAQLPPQAVWVFAGTSDGNLVARELAAQGERVVISTATAYGGE 302
           FTPRGYNDWSEESQA EVAQLP QAVWVFAGTSDGN +A ELA QG  VV+STAT YGGE
Sbjct: 241 FTPRGYNDWSEESQAEEVAQLPSQAVWVFAGTSDGNALAAELAGQGRPVVVSTATGYGGE 300

Query: 303 LASQDCPGAHVWSGRQGVEARRQALRESQARVLVDATHPFAVQMSQQLMTLAKELAIPYL 362
           LA  DCPGA VWSGRQG+EARRQALR+S+ARVLVDATHPFAVQMSQQLMTL++EL IPYL
Sbjct: 301 LARGDCPGAFVWSGRQGLEARRQALRDSRARVLVDATHPFAVQMSQQLMTLSQELGIPYL 360

Query: 363 RYERASDLVADDPHACADMEEAATRAIAMGRRIFLATGSKDLGSFLQAPGAADKQWFARV 422
           RYER  +L ADDPHACADME+AA +A+AMG+RIFLATGSKDL +FLQAPGA ++QWFARV
Sbjct: 361 RYERPGELAADDPHACADMEDAAHKAMAMGQRIFLATGSKDLATFLQAPGAQERQWFARV 420

Query: 423 TADPDFIKRALELGLPRAHLCAMQGPFSQAFNEALWRDWGIDCVVTKDSGEAGGYRAKVE 482
           TADPDFI RALELGLPRAHLCAMQGPFSQAFNEALWRDWGIDCVVTKDSGEAGGY AK E
Sbjct: 421 TADPDFISRALELGLPRAHLCAMQGPFSQAFNEALWRDWGIDCVVTKDSGEAGGYHAKAE 480

Query: 483 AARALGIPLLTVRRPALAYPQVAHDVPTLQAQLAALAGG 521
           AARALGIPLLTVRRP L YPQVAHD  +++A LAAL GG
Sbjct: 481 AARALGIPLLTVRRPPLDYPQVAHDFGSVRAHLAALTGG 519


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,644,451
Number of extensions: 68550
Number of successful extensions: 240
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 431
Effective length of database: 1,193,720
Effective search space: 514493320
Effective search space used: 514493320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)