BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0021.p
         (447 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransfera...   413   e-116
gi|300311964|ref|YP_003776056.1| precorrin-2 C20-methyltransfera...   328   5e-91
gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III C-methyltr...    62   1e-10

>gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/206 (98%), Positives = 203/206 (98%)

Query: 242 DTAALDLEQQQACYVRAQEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSS 301
           DTAALDLEQQQACYVRAQEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSS
Sbjct: 53  DTAALDLEQQQACYVRAQEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSS 112

Query: 302 FTAAAAAVSAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKK 361
           FTAAAAAVSAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKK
Sbjct: 113 FTAAAAAVSAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKK 172

Query: 362 IVNDLLLHYPPETPVTLVYRATWPEQRIYQGSLDKVLEENKRGEWNLTTMMLVGAALNKE 421
           IV DLLLHYPP TPVTLVYRATWPEQRIYQG LDKVLEENKRGEWNLTTMMLVGAALNKE
Sbjct: 173 IVTDLLLHYPPATPVTLVYRATWPEQRIYQGQLDKVLEENKRGEWNLTTMMLVGAALNKE 232

Query: 422 QVAESSLYSKDFTHLFRVVKKNKDAA 447
           QVAESSLYSKDFTHLFRVVKKNKDAA
Sbjct: 233 QVAESSLYSKDFTHLFRVVKKNKDAA 258


>gi|300311964|ref|YP_003776056.1| precorrin-2 C20-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  328 bits (841), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 162/172 (94%), Positives = 168/172 (97%)

Query: 1   MSGRLTGIGVGPGPAGFLPLAALTALRSADVIYIPRARGADLSVALQCLEGVEFDRSRLC 60
           MSGRLTGIGVGPGPAG+LPLAA+ ALRSAD+IYIPRARGADLSVALQCL+GVEFDRSRLC
Sbjct: 5   MSGRLTGIGVGPGPAGYLPLAAIAALRSADLIYIPRARGADLSVALQCLDGVEFDRSRLC 64

Query: 61  EIEFNMDPDRQVLQEHYAQLGQQLAAQLRQGLQVVYLTIGDALTYSTYGYVLAAVRDLYP 120
           EIEFNMDPDRQVLQEHYAQLGQQLAAQLRQGLQVVYLTIGDALTYSTYGYVLAAVRDLYP
Sbjct: 65  EIEFNMDPDRQVLQEHYAQLGQQLAAQLRQGLQVVYLTIGDALTYSTYGYVLAAVRDLYP 124

Query: 121 GCDCVTLPGITSYAAAAAALEWPLGVGKERTLILPCPEDAATLRTEIEGHDI 172
           GCDCVT PGITSYAAAAAALEWPLGVGKERTLILPCP+DAA+LR EIE HDI
Sbjct: 125 GCDCVTFPGITSYAAAAAALEWPLGVGKERTLILPCPDDAASLRAEIESHDI 176


>gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III
           C-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 256 VRAQEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSSFTAAAAAVSAELTK 315
           V A +Q   VVRL  GDP ++G   E+MR L+   I YE+VPG+++  AAA+A    LT+
Sbjct: 93  VEAAQQYRRVVRLKGGDPMLFGRADEEMRALEEHHIPYEIVPGITAALAAASAAKRPLTR 152

Query: 316 PEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKKIVNDLL-LHYPPET 374
             +++SV L   S   + V E + +     +  T+  ++ G         LL L + P+T
Sbjct: 153 RGIARSVSLFTSS---TGVDEPDEVR--MPNGDTLVQYMGGREATATAQRLLALGHAPDT 207

Query: 375 PVTLVYRATWPEQRIYQ 391
           PV +V   + P+Q IY 
Sbjct: 208 PVVVVENCSRPDQHIYH 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,251,115
Number of extensions: 46374
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 3
Length of query: 447
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 359
Effective length of database: 1,203,190
Effective search space: 431945210
Effective search space used: 431945210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)