BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0020.p
         (397 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311965|ref|YP_003776057.1| cobalamin biosynthesis CbiD tra...   708   0.0  

>gi|300311965|ref|YP_003776057.1| cobalamin biosynthesis CbiD
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/395 (89%), Positives = 367/395 (92%)

Query: 3   EASGELQRAEYDLSVLAPNGLRRGRSTGSCATAAVRAALYRLLAGMTVQQTEVSLPDGLH 62
           +AS ELQRAEYDL+VLAPNGLRRGRSTGSCATAAVRAALYRLLAG+T+Q+TEVSLPDG H
Sbjct: 2   DASSELQRAEYDLAVLAPNGLRRGRSTGSCATAAVRAALYRLLAGVTLQETEVSLPDGRH 61

Query: 63  YLSVPIQSVSMIDADTAQAEVLKDGGDDPDNTHGATIVAQVRRNAGGEVHFFAGEGVGTA 122
           YL VP+Q+V MI  D AQA+VLKDGGDDPDNTHGATI AQVRRN  GEV FFAG+GVGTA
Sbjct: 62  YLCVPVQAVEMIAPDIAQADVLKDGGDDPDNTHGATIFAQVRRNQSGEVRFFAGQGVGTA 121

Query: 123 TMPGLRVAVGEPAINPVPRAMMRAAVAEVLAELLPGAQGWGFDLTIGCREGLSIAPKTFN 182
           TMPGLRVAVGEPAINPVPRAMMRAAVAEVLAEL PG    GFDLTIGCREG+SIAPKTFN
Sbjct: 122 TMPGLRVAVGEPAINPVPRAMMRAAVAEVLAELRPGEPACGFDLTIGCREGVSIAPKTFN 181

Query: 183 PKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGDAVAYLPGKIGRVFVA 242
           PKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGDAVAYLPGKIGRVFVA
Sbjct: 182 PKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGDAVAYLPGKIGRVFVA 241

Query: 243 QTLGLPDKRSVQIANFLGDALDFTQKALAEEGRTLPLLWLAGHPGKLAKVLDGVWDTHSS 302
           Q LGLPDKRSVQIANFLGDALDFT++ALAE GRTLPLLWLAGHPGKLAKVLDGVWDTHSS
Sbjct: 242 QELGLPDKRSVQIANFLGDALDFTEQALAEAGRTLPLLWLAGHPGKLAKVLDGVWDTHSS 301

Query: 303 KSNMAMQGVARVAEEMNAAGQGVWFDAALLQQMKEANTVEAIIELVRQQDAALSRRLWCE 362
           KSNMAMQGVARVAEEMNAA  GV FDA LLQQMKEANTVEAIIELVRQQDAAL+RRLWCE
Sbjct: 302 KSNMAMQGVARVAEEMNAAESGVLFDAPLLQQMKEANTVEAIIELVRQQDAALARRLWCE 361

Query: 363 IEARIAALTQARVPAVERIAVRLFDLDGQQLGEGA 397
           IEARIA L QARVP+V RI VRLFDL+G QLG GA
Sbjct: 362 IEARIATLAQARVPSVARIEVRLFDLEGHQLGAGA 396


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,196,002
Number of extensions: 47835
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,207,925
Effective search space: 374456750
Effective search space used: 374456750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)