BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0017.p
         (1262 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311969|ref|YP_003776061.1| cobalamin biosynthesis protein ...   721   0.0  

>gi|300311969|ref|YP_003776061.1| cobalamin biosynthesis protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1397

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/463 (79%), Positives = 387/463 (83%), Gaps = 44/463 (9%)

Query: 706  DDGALPHALSELDGAGVAHLIEDLDGYLCELGAAQIRDGLHILGRMPDAQQLPDMLVALT 765
            ++G LPHAL+ELDGAGVAHLIEDLDGYLCELGAAQIRDGLHILGR PD  Q+PDMLVALT
Sbjct: 726  EEGELPHALTELDGAGVAHLIEDLDGYLCELGAAQIRDGLHILGRTPDQAQMPDMLVALT 785

Query: 766  RLPNQDLPGLQEEVARLFGLSLDMLLEHKGRRLNIDDALSRTAGRAIVTRADALEAIDAL 825
            RLPNQDLPGLQEEVARLFGLSLDMLLEHKGRRLNIDDAL+R A R I TRADALEAIDAL
Sbjct: 786  RLPNQDLPGLQEEVARLFGLSLDMLLEHKGRRLNIDDALARCADRPIATRADALEAIDAL 845

Query: 826  CLSLMQALQHQGFAVPAIEGVIQTLFAPLFXA---------------------------- 857
            CL LMQALQ   FA  AI+ V+ ++FA L  A                            
Sbjct: 846  CLRLMQALQEHDFAPTAIDRVLGSVFAALEQASPEQRPRLQPAMSQAATSVLGGMRAMAR 905

Query: 858  ----------------IKATDTGAVRRILSFACEQLVPRLQRTDEEISNLLNGLRGGYIP 901
                             +A DTGAVRR+L+FACE+LVPRL RT EEI NLLNGLRGGYIP
Sbjct: 906  PAAPAPRRAAPASAPSRRAADTGAVRRVLAFACEELVPRLHRTSEEIGNLLNGLRGGYIP 965

Query: 902  AGPSGSPTRGMAHILPTGRNFYSVDPRSVPSQSAWRVGQQLAREVLERHHRESGDYPESV 961
            AGPSGSPTRGMAHILPTGRNFYSVDPRSVPSQSAWRVGQQLAREVL+RHHRE+G YPESV
Sbjct: 966  AGPSGSPTRGMAHILPTGRNFYSVDPRSVPSQSAWRVGQQLAREVLQRHHRETGHYPESV 1025

Query: 962  AISIWGTSAMRTHGDDVAQILSLMGAQPVWREGNRQVAGVELIPLDQLQRPRIDVTTRIS 1021
            AISIWGTSAMRTHGDDVAQIL LMGA+P+WR GNRQVAGVEL+PL++LQRPRIDVTTRIS
Sbjct: 1026 AISIWGTSAMRTHGDDVAQILWLMGARPLWRAGNRQVAGVELVPLEELQRPRIDVTTRIS 1085

Query: 1022 GFFRDAFPQLIELIDDAVQLAIAADEPEDMNFVRKHYLRDLQQAMQGGLGQAEAAAQASY 1081
            GFFRDAFPQLIELIDDAVQLAIAADEPE MNFVRKHYLRDL Q M  GLGQAEAAAQASY
Sbjct: 1086 GFFRDAFPQLIELIDDAVQLAIAADEPETMNFVRKHYLRDLAQGMGAGLGQAEAAAQASY 1145

Query: 1082 RVFGAKPGSYGAGILPLIQEKNWQDQADFAEAYINWGGYAYGR 1124
            RVFGAKPGSYGAGILPLIQEKNWQDQADFAEAYINWGG+AYGR
Sbjct: 1146 RVFGAKPGSYGAGILPLIQEKNWQDQADFAEAYINWGGFAYGR 1188



 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/137 (89%), Positives = 132/137 (96%)

Query: 1126 RDLKEETLRVFRARVVNPKWLASIRRHGYKGGLELTATVDYLFGYDATAQVMEDWMYQQL 1185
            RDLKEETLRVFRARVVNPKWLASI+RHGYKGGLEL+ATVDYLFGYDATAQV++DWMYQQL
Sbjct: 1261 RDLKEETLRVFRARVVNPKWLASIQRHGYKGGLELSATVDYLFGYDATAQVLDDWMYQQL 1320

Query: 1186 AETYGFDPAMREFLEQANPWAQNAIAERLLEAASRGMWQTPAVQTIEQLRSLYLHSEALL 1245
            AETYGFDPAMR+FLE+ANPWAQNAIAERLLEAASRGMWQ P  QT+E+LR LYLHSE LL
Sbjct: 1321 AETYGFDPAMRQFLEEANPWAQNAIAERLLEAASRGMWQAPDAQTLERLRQLYLHSETLL 1380

Query: 1246 EARGETVRGSEHTKDMQ 1262
            EARGETVRGSEHTKD+Q
Sbjct: 1381 EARGETVRGSEHTKDLQ 1397


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 3,910,121
Number of extensions: 171917
Number of successful extensions: 613
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 2
Length of query: 1262
Length of database: 1,619,870
Length adjustment: 96
Effective length of query: 1166
Effective length of database: 1,165,310
Effective search space: 1358751460
Effective search space used: 1358751460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 136 (57.0 bits)