BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0015.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311970|ref|YP_003776062.1| integral membrane protein [Herb...   367   e-103

>gi|300311970|ref|YP_003776062.1| integral membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  367 bits (942), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/248 (80%), Positives = 208/248 (83%), Gaps = 13/248 (5%)

Query: 9   MASAVVVAGALSGVLLSGVQQFQVEKIILKAEEYEKAGESAAPAADDHAHEPAAQAAAHE 68
           MASAVVVAGALSGVLLSGVQQFQVEK+IL+AE+YEKA E  A AA   AHE       HE
Sbjct: 1   MASAVVVAGALSGVLLSGVQQFQVEKLILQAEQYEKAAEEGASAAPQAAHE-------HE 53

Query: 69  HSHANAHEHEHAH------DANAWEPADGAERTGYTVLANVSMAVGFALLLVAAFALSGR 122
           H  A+ H    AH      DA+AWEPADGAERTGYTVLANVSMAVGFALLLVAA  LSGR
Sbjct: 54  HDQAHEHAAASAHAHEHSHDADAWEPADGAERTGYTVLANVSMAVGFALLLVAAITLSGR 113

Query: 123 QISWRSGLLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQARQLWWVMTAAMTAASLGLFV 182
           Q+SWRSGLLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQARQ WWVMTA MTAASLGLFV
Sbjct: 114 QVSWRSGLLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQARQFWWVMTAVMTAASLGLFV 173

Query: 183 FTRGWPWKLVGVMLLVVPHFIGAPQPEVHGSVAPEELAQAFIRATAAANAVFWLALGGLT 242
           FTR W  KL+ V LLVVPH +GAPQPEVHG VAPEELA AFIRATA ANAVFWLALGGLT
Sbjct: 174 FTRAWWCKLLAVALLVVPHLVGAPQPEVHGGVAPEELAHAFIRATALANAVFWLALGGLT 233

Query: 243 GFFYRRFG 250
           GFFYRRFG
Sbjct: 234 GFFYRRFG 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 637,286
Number of extensions: 24275
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)