BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0011.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311973|ref|YP_003776065.1| hypothetical protein Hsero_2661...    94   5e-21

>gi|300311973|ref|YP_003776065.1| hypothetical protein Hsero_2661
           [Herbaspirillum seropedicae SmR1]
          Length = 214

 Score = 94.4 bits (233), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 58/95 (61%)

Query: 40  RVLCEPVKAGPAAGAQAMVLYLSPFDAHLDALWLGLAVEDYQVLPVASFSPDELVARHQG 99
            V+CE +  G  AG  AMV+YLSP +A +DA W   +   YQVL V  F PDEL+ +H+ 
Sbjct: 22  EVMCESIAVGSLAGRDAMVVYLSPLEADIDAAWNARSGGHYQVLAVHDFLPDELLRQHRD 81

Query: 100 HLPYCLHLAWGAHDGRIAVRAQGXAIWCGCRRRAW 134
            LPYCLH+ WGA DGR+AVR  G  +       AW
Sbjct: 82  SLPYCLHIGWGARDGRLAVRRDGGLVRVSAAALAW 116


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 628,083
Number of extensions: 23207
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)