BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0005.p
         (337 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate uridyly...   537   e-154
gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate uridyly...   446   e-126

>gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  537 bits (1384), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/309 (85%), Positives = 282/309 (91%), Gaps = 2/309 (0%)

Query: 29  MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 88
           MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE
Sbjct: 1   MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 60

Query: 89  TIRNVIPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDAAPGQKNVMAQ 148
           TIR+V+PKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMD   GQKNVMAQ
Sbjct: 61  TIRHVVPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDVDAGQKNVMAQ 120

Query: 149 MTELYEREGKSLLAVQDVPRPETRQYGIVSGTAHGERTELLSGIVEKPSPEDAPSTLAVV 208
           MT ++EREGKSLLAVQDVPRPETRQYGIVSG+A+ +R EL+SGIVEKP+PE+APSTLAVV
Sbjct: 121 MTAMFEREGKSLLAVQDVPRPETRQYGIVSGSAYADRLELMSGIVEKPAPEEAPSTLAVV 180

Query: 209 GRYVLTPAIFERLENIGXVGDGEIQLTDAISALMEQEQILAYRYEGQRFDCGSKLGYLKA 268
           GRYVLTPAIFERLENIG    GEIQLTDAISAL++QEQILAYRYEGQRFDCGSKLGYLKA
Sbjct: 181 GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA 240

Query: 269 AVAMGFKHKEVGTGFAQFLQEFTSQNDLAQAAQPKGPATVTPLKTAAGNQPGSTPVSSDK 328
           AVAMGFKHKEVG+GFAQFLQ+F +Q+DL QAAQPKGPATVTPLK  A   P       +K
Sbjct: 241 AVAMGFKHKEVGSGFAQFLQDFAAQHDLQQAAQPKGPATVTPLKPNAA--PAHGGAGQEK 298

Query: 329 LPAVANSIM 337
            P  ANS+M
Sbjct: 299 QPVAANSVM 307


>gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  446 bits (1146), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/294 (72%), Positives = 249/294 (84%)

Query: 1   MKKITKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIQYAVEEAVEAGITEMIFITGRN 60
           +KKI KAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLI YAVEEAV AGITEM+FITGRN
Sbjct: 3   IKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGRN 62

Query: 61  KRAIEDHFDKAYELESELEAAGKVKLLETIRNVIPKHINCVYVRQAEPLGLGHAVLLAKP 120
           KRAIEDHFDKAYELESELEAAGK KLLE ++NV+PK +NC+++RQ+ PLGLGHAVL A+P
Sbjct: 63  KRAIEDHFDKAYELESELEAAGKKKLLEIVQNVVPKSVNCIFIRQSVPLGLGHAVLCARP 122

Query: 121 LVGDEPFAVLLADDFMDAAPGQKNVMAQMTELYEREGKSLLAVQDVPRPETRQYGIVSGT 180
           +VG+EPFAVLLADDFMD   G K V+AQMTE+YEREG S+LAVQ+VP+ +T+QYGIVS T
Sbjct: 123 VVGEEPFAVLLADDFMDTDAGVKPVLAQMTEIYEREGMSMLAVQEVPQSDTKQYGIVSAT 182

Query: 181 AHGERTELLSGIVEKPSPEDAPSTLAVVGRYVLTPAIFERLENIGXVGDGEIQLTDAISA 240
            +    E ++ IVEKP+PE+APSTLAVVGRYVL   IF+ LENIG    GEIQLTD I+ 
Sbjct: 183 PYQPNLERVNAIVEKPAPEEAPSTLAVVGRYVLNNRIFDYLENIGRGAGGEIQLTDGIAK 242

Query: 241 LMEQEQILAYRYEGQRFDCGSKLGYLKAAVAMGFKHKEVGTGFAQFLQEFTSQN 294
           LM+ E +LAYRY+GQR+DCGSKLGYLKA VAMG KH E G  F++FL++   + 
Sbjct: 243 LMQAESVLAYRYQGQRYDCGSKLGYLKATVAMGMKHPETGAAFSEFLKDVAGKQ 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,074,244
Number of extensions: 46309
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,212,660
Effective search space: 304377660
Effective search space used: 304377660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)